| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12548 | 4:29,870,782-29,873,701 | - | C2H4g22497 | CX4g036015 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| C1H4g28067 | 4:29,874,706-29,880,746 | + | C2H4g29038 | CX4g033656 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| C1H4g24932 | 4:29,889,703-29,891,698 | - | C2H4g16367 | CX4g035876 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| C1H4g07972 | 4:29,895,898-29,897,966 | - | C2H4g09789 | CX4g035340 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| C1H4g22743 | 4:29,898,781-29,902,244 | - | C2H4g30313 | CX4g036253 | LOC_Os04g57550 | Os04g0671200 | - | Detail |
| C1H4g10516 | 4:29,903,190-29,907,373 | - | C2H4g09887 | CX4g034946 | LOC_Os04g57560 | Os04g0671300 | PAO5, OsPAO5, OsAO2, AO2 | Detail |
| C1H4g18642 | 4:29,914,984-29,917,878 | - | C2H4g11022 | CX4g034217 | LOC_Os04g57590 | Os04g0671700 | OsDJ-1C | Detail |
| C1H4g10863 | 4:29,919,853-29,923,225 | - | C2H4g26599 | CX4g034187 | LOC_Os04g57600 | Os04g0671800 | - | Detail |
| C1H4g29876 | 4:29,925,187-29,932,498 | - | C2H4g28020 | CX4g036532 | LOC_Os04g57610 | Os04g0671900 | - | Detail |
| C1H4g03758 | 4:29,946,857-29,949,895 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57630 | Os04g0672100 | OsPSKR2 | Detail |
| C1H4g28972 | 4:29,961,894-29,967,859 | - | C2H4g16737 | CX4g031927 | LOC_Os04g57640 | Os04g0672200 | - | Detail |
| C1H4g18744 | 4:29,969,283-29,973,110 | - | C2H4g14699 | CX4g031948 | LOC_Os04g57650 | Os04g0672300 | - | Detail |
| C1H4g12099 | 4:29,979,174-29,981,416 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57660 | Os04g0672600 | - | Detail |
| C1H4g02898 | 4:29,987,329-29,990,623 | + | C2H4g13935 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C1H4g21333 | 4:29,991,614-29,994,014 | + | C2H4g25125 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C1H4g29753 | 4:29,995,710-30,000,759 | - | C2H4g28032 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C1H4g17441 | 4:30,023,341-30,023,957 | + | C2H4g17256 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C1H4g06545 | 4:30,030,545-30,034,430 | - | C2H4g16666 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C1H4g12522 | 4:30,037,329-30,037,956 | - | C2H4g21541 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C1H4g09977 | 4:30,039,911-30,040,867 | - | C2H4g03386 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g12076 | 3:25,756,000-25,758,037 | + | C1H3g07329 | CX3g025970 | LOC_Os03g49450 | Os03g0701300 | - | Detail |
| C2H3g02417 | 3:25,759,525-25,761,882 | + | C1H3g07329 | CX3g026197 | LOC_Os03g49464 | Os03g0701400 | - | Detail |
| C2H3g02951 | 3:25,764,459-25,765,572 | + | C1H3g30968 | CX3g026197 | - | - | - | Detail |
| C2H3g12750 | 3:25,773,588-25,775,986 | - | C1H3g23591 | CX3g027768 | LOC_Os03g49490 | Os03g0701600 | - | Detail |
| C2H3g06305 | 3:25,777,901-25,782,322 | - | C1H3g03877 | CX3g028834 | LOC_Os03g49500 | Os03g0701700 | - | Detail |
| C2H3g14249 | 3:25,787,836-25,794,330 | + | C1H3g05492 | CX3g030270 | LOC_Os03g49510 | Os03g0701800 | - | Detail |
| C2H3g17325 | 3:25,794,481-25,798,522 | - | C1H3g29237 | CX3g025317 | LOC_Os03g49520 | Os03g0701900 | - | Detail |
| C2H3g13892 | 3:25,808,187-25,809,661 | - | C1H3g26019 | CX3g029512 | LOC_Os03g49524 | Os03g0702000 | - | Detail |
| C2H3g03163 | 3:25,814,227-25,815,645 | + | C1H3g02000 | CX3g030273 | LOC_Os03g49550 | Os03g0702500 | - | Detail |
| C2H3g18085 | 3:25,833,328-25,838,086 | + | C1H3g01842 | CX3g029283 | LOC_Os03g49570 | Os03g0702700 | - | Detail |
| C2H3g29993 | 3:25,843,604-25,844,257 | - | C1H3g13716 | CX3g025714 | LOC_Os03g49590 | Os03g0702900 | - | Detail |
| C2H3g11714 | 3:25,844,556-25,849,098 | - | C1H3g15421 | CX3g027255 | LOC_Os03g49600 | Os03g0703000 | - | Detail |
| C2H3g22582 | 3:25,851,998-25,857,278 | - | C1H3g29071 | CX3g027190 | LOC_Os03g49610 | Os03g0703100 | - | Detail |
| C2H3g04815 | 3:25,857,718-25,863,088 | - | C1H3g29286 | CX3g028984 | LOC_Os03g49620 | Os03g0703200 | TMS10L | Detail |
| C2H3g29194 | 3:25,863,993-25,870,294 | - | C1H3g20716 | CX3g026534 | LOC_Os03g49630 | Os03g0703300 | - | Detail |
| C2H3g01101 | 3:25,872,696-25,878,901 | - | C1H3g05428 | CX3g027729 | LOC_Os03g49640 | Os03g0703400 | OsCSL1, MKKK22 | Detail |
| C2H3g22172 | 3:25,885,794-25,886,414 | + | C1H3g02932 | CX3g031175 | - | Os03g0703600 | - | Detail |
| C2H3g01738 | 3:25,889,627-25,890,489 | - | - | CX3g024968 | LOC_Os03g49680 | - | - | Detail |
| C2H3g29973 | 3:25,894,402-25,897,031 | + | C1H3g27763 | CX3g028108 | LOC_Os03g49700 | Os03g0703900 | - | Detail |
| C2H3g13190 | 3:25,898,221-25,899,845 | + | C1H3g27362 | CX3g026571 | LOC_Os03g49710 | Os03g0704000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |