| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12548 | 4:29,870,782-29,873,701 | - | C2H4g22497 | CX4g036015 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| C1H4g28067 | 4:29,874,706-29,880,746 | + | C2H4g29038 | CX4g033656 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| C1H4g24932 | 4:29,889,703-29,891,698 | - | C2H4g16367 | CX4g035876 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| C1H4g07972 | 4:29,895,898-29,897,966 | - | C2H4g09789 | CX4g035340 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| C1H4g22743 | 4:29,898,781-29,902,244 | - | C2H4g30313 | CX4g036253 | LOC_Os04g57550 | Os04g0671200 | - | Detail |
| C1H4g10516 | 4:29,903,190-29,907,373 | - | C2H4g09887 | CX4g034946 | LOC_Os04g57560 | Os04g0671300 | PAO5, OsPAO5, OsAO2, AO2 | Detail |
| C1H4g18642 | 4:29,914,984-29,917,878 | - | C2H4g11022 | CX4g034217 | LOC_Os04g57590 | Os04g0671700 | OsDJ-1C | Detail |
| C1H4g10863 | 4:29,919,853-29,923,225 | - | C2H4g26599 | CX4g034187 | LOC_Os04g57600 | Os04g0671800 | - | Detail |
| C1H4g29876 | 4:29,925,187-29,932,498 | - | C2H4g28020 | CX4g036532 | LOC_Os04g57610 | Os04g0671900 | - | Detail |
| C1H4g03758 | 4:29,946,857-29,949,895 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57630 | Os04g0672100 | OsPSKR2 | Detail |
| C1H4g28972 | 4:29,961,894-29,967,859 | - | C2H4g16737 | CX4g031927 | LOC_Os04g57640 | Os04g0672200 | - | Detail |
| C1H4g18744 | 4:29,969,283-29,973,110 | - | C2H4g14699 | CX4g031948 | LOC_Os04g57650 | Os04g0672300 | - | Detail |
| C1H4g12099 | 4:29,979,174-29,981,416 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57660 | Os04g0672600 | - | Detail |
| C1H4g02898 | 4:29,987,329-29,990,623 | + | C2H4g13935 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C1H4g21333 | 4:29,991,614-29,994,014 | + | C2H4g25125 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C1H4g29753 | 4:29,995,710-30,000,759 | - | C2H4g28032 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C1H4g17441 | 4:30,023,341-30,023,957 | + | C2H4g17256 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C1H4g06545 | 4:30,030,545-30,034,430 | - | C2H4g16666 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C1H4g12522 | 4:30,037,329-30,037,956 | - | C2H4g21541 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C1H4g09977 | 4:30,039,911-30,040,867 | - | C2H4g03386 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g04834 | 3:19,023,544-19,035,588 | - | C1H3g31240 | CX3g028524 | LOC_Os03g37270 | Os03g0569900 | - | Detail |
| C2H3g07443 | 3:19,040,751-19,045,537 | - | C1H3g30706 | CX3g031074 | LOC_Os03g37290 | Os03g0570100 | - | Detail |
| C2H3g06300 | 3:19,054,771-19,060,119 | - | C1H3g18124 | CX3g029054 | LOC_Os03g37320 | Os03g0570200 | - | Detail |
| C2H3g03314 | 3:19,126,506-19,131,597 | - | C1H3g17549 | CX3g025116 | LOC_Os03g37411 | Os03g0570800 | - | Detail |
| C2H3g02646 | 3:19,151,101-19,161,292 | - | C1H3g27432 | CX3g029952 | LOC_Os03g37470 | Os03g0571700 | - | Detail |
| C2H3g25696 | 3:19,165,102-19,166,952 | - | - | CX1g003432 | - | - | - | Detail |
| C2H3g08828 | 3:19,188,588-19,195,196 | - | C1H3g08970 | CX3g030772 | LOC_Os03g37490 | Os03g0571900 | PEZ1 | Detail |
| C2H3g29483 | 3:19,196,521-19,197,005 | - | C1H3g05664 | CX3g028394 | - | - | - | Detail |
| C2H3g08636 | 3:19,226,195-19,229,269 | + | C1H3g17823 | - | LOC_Os03g37060 | - | - | Detail |
| C2H3g22194 | 3:19,244,584-19,246,211 | - | C1H3g04391 | CX3g029443 | LOC_Os03g37570 | Os03g0572250 | - | Detail |
| C2H3g06732 | 3:19,247,195-19,249,428 | - | C1H3g31167 | CX3g029172 | LOC_Os03g37580 | Os03g0572300 | - | Detail |
| C2H3g26206 | 3:19,263,500-19,270,752 | - | C1H3g08142 | CX3g027413 | LOC_Os03g37640 | Os03g0572900 | - | Detail |
| C2H3g29849 | 3:19,270,508-19,278,349 | + | - | CX3g028989 | - | - | - | Detail |
| C2H3g15030 | 3:19,278,660-19,284,533 | - | C1H3g26338 | CX3g025229 | LOC_Os03g37920 | Os03g0164400 | - | Detail |
| C2H3g09050 | 3:19,321,807-19,326,813 | - | C1H3g26725 | CX3g027370 | LOC_Os03g37720 | Os03g0573500 | - | Detail |
| C2H3g15322 | 3:19,373,704-19,375,021 | - | C1H5g00153 | CX3g028459 | - | - | - | Detail |
| C2H3g00015 | 3:19,380,984-19,387,931 | - | C1H3g02923 | CX3g027506 | LOC_Os03g37830 | Os03g0574900 | - | Detail |
| C2H3g16573 | 3:19,412,974-19,417,607 | - | C1H3g18240 | CX3g028769 | LOC_Os03g37840 | Os03g0575200 | OsHAK16 | Detail |
| C2H3g27235 | 3:19,468,189-19,472,420 | - | C1H3g26043 | CX3g030121 | LOC_Os03g37930 | Os03g0576200 | OsHAK21 | Detail |
| C2H3g10576 | 3:19,484,275-19,486,264 | + | C1H3g08766 | CX3g030987 | LOC_Os03g37950 | Os03g0576400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |