| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12548 | 4:29,870,782-29,873,701 | - | C2H4g22497 | CX4g036015 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| C1H4g28067 | 4:29,874,706-29,880,746 | + | C2H4g29038 | CX4g033656 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| C1H4g24932 | 4:29,889,703-29,891,698 | - | C2H4g16367 | CX4g035876 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| C1H4g07972 | 4:29,895,898-29,897,966 | - | C2H4g09789 | CX4g035340 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| C1H4g22743 | 4:29,898,781-29,902,244 | - | C2H4g30313 | CX4g036253 | LOC_Os04g57550 | Os04g0671200 | - | Detail |
| C1H4g10516 | 4:29,903,190-29,907,373 | - | C2H4g09887 | CX4g034946 | LOC_Os04g57560 | Os04g0671300 | PAO5, OsPAO5, OsAO2, AO2 | Detail |
| C1H4g18642 | 4:29,914,984-29,917,878 | - | C2H4g11022 | CX4g034217 | LOC_Os04g57590 | Os04g0671700 | OsDJ-1C | Detail |
| C1H4g10863 | 4:29,919,853-29,923,225 | - | C2H4g26599 | CX4g034187 | LOC_Os04g57600 | Os04g0671800 | - | Detail |
| C1H4g29876 | 4:29,925,187-29,932,498 | - | C2H4g28020 | CX4g036532 | LOC_Os04g57610 | Os04g0671900 | - | Detail |
| C1H4g03758 | 4:29,946,857-29,949,895 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57630 | Os04g0672100 | OsPSKR2 | Detail |
| C1H4g28972 | 4:29,961,894-29,967,859 | - | C2H4g16737 | CX4g031927 | LOC_Os04g57640 | Os04g0672200 | - | Detail |
| C1H4g18744 | 4:29,969,283-29,973,110 | - | C2H4g14699 | CX4g031948 | LOC_Os04g57650 | Os04g0672300 | - | Detail |
| C1H4g12099 | 4:29,979,174-29,981,416 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57660 | Os04g0672600 | - | Detail |
| C1H4g02898 | 4:29,987,329-29,990,623 | + | C2H4g13935 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C1H4g21333 | 4:29,991,614-29,994,014 | + | C2H4g25125 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C1H4g29753 | 4:29,995,710-30,000,759 | - | C2H4g28032 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C1H4g17441 | 4:30,023,341-30,023,957 | + | C2H4g17256 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C1H4g06545 | 4:30,030,545-30,034,430 | - | C2H4g16666 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C1H4g12522 | 4:30,037,329-30,037,956 | - | C2H4g21541 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C1H4g09977 | 4:30,039,911-30,040,867 | - | C2H4g03386 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g01001 | 1:31,157,215-31,157,939 | + | C1H1g09909 | CX1g001859 | LOC_Os01g60790 | Os01g0823300 | - | Detail |
| C2H1g22329 | 1:31,159,852-31,162,197 | + | C1H1g09299 | CX1g000409 | LOC_Os01g60800 | Os01g0823400 | - | Detail |
| C2H1g28368 | 1:31,180,789-31,181,596 | + | C1H1g15235 | CX1g000050 | LOC_Os01g60830 | Os01g0823600 | - | Detail |
| C2H1g25336 | 1:31,181,978-31,183,291 | - | C1H1g00815 | CX1g001515 | LOC_Os01g60850 | Os01g0823700 | - | Detail |
| C2H1g15724 | 1:31,191,780-31,193,289 | + | - | - | - | - | - | Detail |
| C2H1g17727 | 1:31,216,032-31,217,464 | + | C1H1g23645 | CX1g003469 | LOC_Os01g60900 | Os01g0824500 | OsEPFL9 | Detail |
| C2H1g23198 | 1:31,226,073-31,227,086 | + | C1H1g13975 | - | - | - | - | Detail |
| C2H1g16723 | 1:31,235,133-31,236,592 | + | C1H1g11676 | CX1g003180 | LOC_Os01g60920 | Os01g0824700 | - | Detail |
| C2H1g02718 | 1:31,239,270-31,242,043 | + | C1H1g20864 | CX1g006995 | LOC_Os01g60930 | Os01g0824800 | - | Detail |
| C2H1g11166 | 1:31,249,117-31,250,593 | + | C1H1g30844 | CX1g007134 | LOC_Os01g60960 | Os01g0825000 | LBD1-8 | Detail |
| C2H1g11491 | 1:31,269,900-31,272,168 | - | C1H1g30975 | CX1g003391 | LOC_Os01g61010 | Os01g0825500 | - | Detail |
| C2H1g13725 | 1:31,280,969-31,285,288 | - | C1H1g04795 | CX1g004445 | LOC_Os01g61030 | Os01g0825700 | - | Detail |
| C2H1g15106 | 1:31,287,231-31,292,994 | - | C1H1g30003 | CX1g002793 | LOC_Os01g61044 | Os01g0825800 | - | Detail |
| C2H1g08505 | 1:31,295,057-31,297,524 | + | C1H1g18090 | CX1g003706 | LOC_Os01g61070 | Os01g0826000 | OsATX | Detail |
| C2H1g27828 | 1:31,315,356-31,317,514 | + | C1H1g02547 | CX1g004814 | LOC_Os01g61080 | Os01g0826400 | OsWRKY24 | Detail |
| C2H1g22369 | 1:31,329,142-31,334,217 | - | C1H1g20253 | CX1g004110 | LOC_Os01g61120 | Os01g0826900 | - | Detail |
| C2H1g22962 | 1:31,335,467-31,339,177 | - | C1H1g11730 | CX1g005102 | LOC_Os01g61150 | Os01g0827200 | - | Detail |
| C2H1g11237 | 1:31,341,563-31,344,088 | + | C1H1g13234 | CX1g005055 | LOC_Os01g61160 | Os01g0827300 | OsChI1 | Detail |
| C2H1g27943 | 1:31,347,496-31,349,454 | + | C1H1g29263 | CX1g001550 | LOC_Os01g61180 | Os01g0827500 | OsExo70B1 | Detail |
| C2H1g07991 | 1:31,351,269-31,352,885 | + | C1H1g29263 | CX1g002001 | LOC_Os01g61190 | Os01g0827600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |