| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02251 | 4:29,440,701-29,440,994 | + | C2H4g07923 | CX4g035528 | LOC_Os04g56610 | - | - | Detail |
| C1H4g07215 | 4:29,444,839-29,449,014 | + | C2H4g09519 | CX4g032531 | LOC_Os04g56620 | Os04g0661600 | OsCNX1 | Detail |
| C1H4g05764 | 4:29,449,074-29,456,814 | - | C2H4g30358 | CX4g035527 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| C1H4g15510 | 4:29,458,517-29,459,700 | - | C2H4g15418 | CX4g036335 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| C1H4g17837 | 4:29,461,361-29,465,005 | + | C2H4g25643 | CX4g035742 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| C1H4g07157 | 4:29,465,879-29,467,585 | + | C2H4g06604 | CX4g035185 | LOC_Os04g56654 | - | - | Detail |
| C1H4g06952 | 4:29,468,052-29,469,832 | - | C2H4g27865 | CX4g035521 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| C1H4g20842 | 4:29,492,711-29,495,836 | - | C2H4g27508 | CX4g032460 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| C1H4g09059 | 4:29,497,177-29,501,717 | - | C2H4g17303 | CX4g034138 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| C1H4g13098 | 4:29,503,747-29,509,876 | + | C2H4g16716 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C1H4g29894 | 4:29,510,592-29,512,553 | - | C2H4g14267 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C1H4g08308 | 4:29,529,386-29,535,319 | + | C2H4g26679 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C1H4g00285 | 4:29,538,771-29,544,273 | - | C2H4g19453 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C1H4g10605 | 4:29,546,843-29,547,097 | + | C2H4g23478 | CX4g034501 | - | - | - | Detail |
| C1H4g18316 | 4:29,547,148-29,550,525 | + | C2H4g29870 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C1H4g08413 | 4:29,551,368-29,552,386 | - | C2H4g27682 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C1H4g06808 | 4:29,560,529-29,567,508 | - | C2H4g25028 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C1H4g18422 | 4:29,575,958-29,581,942 | - | C2H4g20102 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C1H4g28826 | 4:29,615,096-29,617,428 | - | C2H4g12473 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C1H4g05011 | 4:29,618,216-29,620,579 | - | C2H4g26922 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g15716 | 4:13,201,285-13,204,387 | - | C1H4g03787 | CX4g031567 | LOC_Os04g25570 | Os04g0321800 | - | Detail |
| C2H4g26903 | 4:13,378,381-13,378,698 | + | C1H4g31637 | CX4g034246 | - | Os04g0336700 | - | Detail |
| C2H4g15129 | 4:13,384,393-13,384,955 | - | C1H4g03180 | CX4g033284 | LOC_Os04g26790 | Os04g0336600 | - | Detail |
| C2H4g22692 | 4:13,388,143-13,394,174 | - | C1H4g28418 | CX4g033284 | LOC_Os04g26790 | Os04g0336600 | - | Detail |
| C2H4g17804 | 4:13,421,213-13,430,339 | - | C1H4g14114 | CX4g033284 | LOC_Os04g26834 | Os04g0337000 | - | Detail |
| C2H4g18381 | 4:13,441,368-13,456,566 | + | C1H4g19182 | CX4g031766 | LOC_Os04g26850 | Os04g0337300 | - | Detail |
| C2H4g01340 | 4:13,465,953-13,473,349 | + | C1H4g07832 | CX4g036366 | LOC_Os04g26870 | Os04g0337500 | - | Detail |
| C2H4g17077 | 4:13,479,255-13,481,826 | + | C1H4g28393 | CX4g036366 | LOC_Os04g26920 | Os04g0337800 | - | Detail |
| C2H4g25762 | 4:13,485,056-13,485,751 | + | C1H4g19562 | CX4g035559 | LOC_Os04g27060 | Os04g0337800 | - | Detail |
| C2H4g03837 | 4:13,487,747-13,491,049 | + | C1H4g14004 | CX4g035559 | LOC_Os04g26910 | Os04g0338000 | - | Detail |
| C2H4g15649 | 4:13,512,572-13,516,730 | + | C1H4g28393 | CX4g035559 | LOC_Os04g26920 | Os04g0338000 | - | Detail |
| C2H4g09932 | 4:13,525,528-13,526,049 | - | - | - | LOC_Os04g26930 | - | - | Detail |
| C2H4g16526 | 4:13,537,103-13,537,419 | - | C1H8g04458 | CX4g034901 | - | - | - | Detail |
| C2H4g14050 | 4:13,544,058-13,545,822 | + | C1H4g23322 | CX4g036012 | LOC_Os04g26960 | Os04g0344100 | - | Detail |
| C2H4g16024 | 4:13,547,818-13,549,010 | + | C1H4g09628 | CX4g036012 | LOC_Os04g26960 | Os04g0344100 | - | Detail |
| C2H4g12078 | 4:13,588,283-13,588,705 | + | C1H4g07892 | - | - | - | - | Detail |
| C2H4g03238 | 4:13,592,755-13,592,988 | + | - | - | - | - | - | Detail |
| C2H4g17478 | 4:13,595,885-13,598,944 | + | C1H4g29227 | CX4g035619 | LOC_Os04g27020 | Os04g0178400 | CYP99A3 | Detail |
| C2H4g26112 | 4:13,606,381-13,610,165 | + | C1H4g26057 | CX4g032815 | LOC_Os04g27060 | Os04g0339400 | OsAKR1 | Detail |
| C2H4g17594 | 4:13,612,409-13,618,173 | - | C1H4g31520 | CX4g031945 | LOC_Os04g27070 | Os04g0344100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |