| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23223 | 4:28,886,893-28,888,704 | - | C2H4g09445 | CX4g034578 | LOC_Os04g55660 | Os04g0650200 | - | Detail |
| C1H4g17876 | 4:28,890,428-28,893,741 | - | C2H4g25070 | CX4g035022 | LOC_Os04g55670 | Os04g0650300 | OsGT43I | Detail |
| C1H4g20767 | 4:28,902,933-28,905,100 | + | C2H4g30089 | CX4g032417 | LOC_Os04g55690 | Os04g0650500 | - | Detail |
| C1H4g29586 | 4:28,905,682-28,908,672 | - | C2H4g16279 | CX4g034904 | LOC_Os04g55700 | Os04g0650600 | - | Detail |
| C1H4g11243 | 4:28,917,746-28,920,513 | + | C2H4g25286 | CX4g032420 | LOC_Os04g55710 | Os04g0650700 | - | Detail |
| C1H4g03632 | 4:28,923,444-28,926,328 | + | C2H4g06390 | CX4g033907 | LOC_Os04g55720 | Os04g0650800 | - | Detail |
| C1H4g09395 | 4:28,926,645-28,935,930 | - | C2H4g14659 | CX4g033850 | LOC_Os04g55730 | Os04g0650900 | - | Detail |
| C1H4g15692 | 4:28,936,703-28,938,087 | - | C2H4g14244 | CX4g032222 | LOC_Os04g55740 | Os04g0651000 | - | Detail |
| C1H4g22868 | 4:28,955,508-28,956,195 | - | C2H4g04267 | CX4g035054 | LOC_Os04g55770 | Os04g0651600 | - | Detail |
| C1H4g05341 | 4:28,970,679-28,976,005 | - | C2H4g03455 | CX4g033402 | LOC_Os04g55800 | Os04g0652400 | - | Detail |
| C1H4g19231 | 4:28,983,671-28,988,052 | - | C2H4g29917 | CX4g035476 | LOC_Os04g55810 | Os04g0652500 | - | Detail |
| C1H4g21279 | 4:28,989,422-28,995,418 | + | C2H4g13053 | CX4g034733 | LOC_Os04g55840 | Os04g0652600 | - | Detail |
| C1H4g27223 | 4:28,997,336-28,997,747 | + | C2H4g17182 | CX4g032019 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C1H4g01148 | 4:28,998,741-28,999,789 | + | C2H4g24107 | CX4g034882 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C1H4g09382 | 4:29,001,265-29,003,398 | - | C2H4g15013 | CX4g035227 | LOC_Os04g55860 | Os04g0652900 | - | Detail |
| C1H4g27108 | 4:29,020,871-29,025,229 | + | C2H4g11780 | CX4g034020 | LOC_Os04g55920 | Os04g0653000 | EG2, OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, EG2/OsJAZ1, JAZ1/EG2 | Detail |
| C1H4g20973 | 4:29,025,750-29,027,749 | - | C2H4g28993 | CX4g036062 | LOC_Os04g55930 | Os04g0653100 | - | Detail |
| C1H4g27383 | 4:29,029,408-29,033,885 | + | C2H4g12547 | CX4g034519 | LOC_Os04g55940 | Os04g0653200 | OsCAX3 | Detail |
| C1H4g14097 | 4:29,040,501-29,040,941 | + | C2H4g01169 | - | LOC_Os04g55950 | Os04g0653300 | - | Detail |
| C1H4g13362 | 4:29,045,146-29,051,205 | + | C2H4g18627 | CX4g033116 | LOC_Os04g55960 | Os04g0653400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06538 | 2:24,858,158-24,860,369 | - | C1H2g30325 | - | LOC_Os02g44200 | Os02g0660800 | - | Detail |
| C2H2g11376 | 2:24,866,695-24,868,579 | - | C1H2g20977 | CX2g023483 | LOC_Os02g44220 | Os02g0661000 | - | Detail |
| C2H2g24399 | 2:24,869,774-24,871,887 | - | C1H2g04631 | CX2g021647 | LOC_Os02g44230 | Os02g0661100 | - | Detail |
| C2H2g19128 | 2:24,881,492-24,882,190 | - | C1H2g25412 | CX2g022676 | LOC_Os02g44250 | Os02g0661300 | OsINP1 | Detail |
| C2H2g21204 | 2:24,883,658-24,884,645 | - | C1H2g21912 | CX2g023571 | LOC_Os02g44260 | Os02g0661400 | - | Detail |
| C2H2g30070 | 2:24,887,869-24,890,673 | + | C1H2g22461 | CX2g019731 | - | - | - | Detail |
| C2H2g04950 | 2:24,893,544-24,894,458 | - | - | CX2g022635 | LOC_Os02g44280 | Os02g0661600 | - | Detail |
| C2H2g17837 | 2:24,902,059-24,902,676 | + | - | CX2g020697 | LOC_Os02g44290 | Os02g0661800 | - | Detail |
| C2H2g27433 | 2:24,904,371-24,906,912 | + | C1H2g15114 | CX2g019044 | LOC_Os02g44300 | Os02g0661900 | - | Detail |
| C2H2g22018 | 2:24,909,353-24,909,754 | + | - | CX2g020879 | LOC_Os02g44310 | Os02g0662000 | RCc3 | Detail |
| C2H2g14990 | 2:24,922,058-24,922,444 | + | - | CX2g019337 | LOC_Os02g44320 | Os02g0662100 | - | Detail |
| C2H2g04017 | 2:24,927,035-24,929,671 | + | C1H2g19773 | CX2g020576 | LOC_Os02g44330 | Os02g0662200 | OsGEF3 | Detail |
| C2H2g28023 | 2:24,931,752-24,932,241 | - | C1H2g15266 | CX2g023295 | LOC_Os02g44340 | Os02g0662300 | - | Detail |
| C2H2g19421 | 2:24,943,577-24,945,709 | + | C1H2g05666 | CX2g020332 | LOC_Os02g44360 | Os02g0662700 | - | Detail |
| C2H2g14821 | 2:24,951,770-24,953,923 | + | C1H2g06339 | CX2g024062 | LOC_Os02g44370 | Os02g0663100 | OsHAM2 | Detail |
| C2H2g21975 | 2:24,966,909-24,986,162 | - | C1H2g09242 | CX2g024718 | LOC_Os02g44380 | Os02g0663300 | - | Detail |
| C2H2g15214 | 2:24,990,676-24,992,244 | - | C1H2g16152 | CX2g024015 | LOC_Os02g44470 | Os02g0663800 | OsADF1 | Detail |
| C2H2g17711 | 2:24,992,920-24,994,923 | - | C1H2g26889 | CX2g023576 | LOC_Os02g44480 | Os02g0106300 | - | Detail |
| C2H2g04975 | 2:24,995,124-24,997,794 | - | C1H2g29993 | CX2g024801 | LOC_Os02g44490 | Os02g0663900 | - | Detail |
| C2H2g10873 | 2:25,001,718-25,004,064 | + | C1H2g17275 | CX2g024273 | LOC_Os02g44500 | Os02g0664000 | OsGPX3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |