| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g18694 | 4:28,658,302-28,658,889 | - | C2H4g14418 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C1H4g06884 | 4:28,663,063-28,666,905 | - | C2H4g01093 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C1H4g28592 | 4:28,673,122-28,676,448 | - | C2H4g27076 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C1H4g12666 | 4:28,677,201-28,678,644 | - | C2H4g00324 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C1H4g04933 | 4:28,710,655-28,711,314 | - | C2H4g28891 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g01013 | 4:28,713,036-28,713,869 | - | C2H4g25523 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g17955 | 4:28,734,525-28,738,568 | - | C2H4g00723 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C1H4g25822 | 4:28,741,443-28,744,608 | + | C2H4g03628 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C1H4g16013 | 4:28,750,055-28,750,903 | + | C2H4g20686 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C1H4g25119 | 4:28,755,593-28,760,287 | - | C2H4g26419 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C1H4g03048 | 4:28,765,828-28,772,012 | + | C2H4g12616 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C1H4g02593 | 4:28,781,088-28,786,577 | + | C2H4g21483 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| C1H4g09680 | 4:28,821,780-28,824,455 | + | C2H4g14278 | CX4g036135 | LOC_Os04g55560 | Os04g0649100 | SHAT1, AP2/EREBP#043, AP2/EREBP43 | Detail |
| C1H4g00144 | 4:28,830,435-28,836,457 | + | C2H4g17474 | CX4g035239 | LOC_Os04g55570 | Os04g0649200 | - | Detail |
| C1H4g30735 | 4:28,845,828-28,846,709 | - | C2H4g02532 | CX4g032527 | LOC_Os04g55590 | Os04g0649400 | WOX4, OsWOX4, Os WOX4 | Detail |
| C1H4g22307 | 4:28,858,617-28,859,324 | + | C2H4g01325 | - | - | - | - | Detail |
| C1H4g26510 | 4:28,860,405-28,863,982 | - | C2H4g00524 | CX4g031472 | LOC_Os04g55620 | Os04g0649700 | - | Detail |
| C1H4g26377 | 4:28,867,909-28,868,871 | + | C2H4g24247 | CX4g033189 | LOC_Os04g55640 | Os04g0649900 | - | Detail |
| C1H4g19253 | 4:28,875,233-28,877,176 | + | C2H4g10875 | CX4g032778 | - | - | - | Detail |
| C1H4g30646 | 4:28,877,801-28,881,460 | - | C2H4g01573 | CX4g032034 | LOC_Os04g55650 | Os04g0650000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09671 | 3:25,345,746-25,349,279 | + | C1H3g28504 | CX3g027541 | LOC_Os03g48490 | Os03g0691500 | - | Detail |
| C2H3g02374 | 3:25,354,444-25,355,076 | + | - | - | - | - | - | Detail |
| C2H3g25810 | 3:25,363,324-25,370,149 | + | C1H3g22244 | CX3g025878 | LOC_Os03g48540 | Os03g0691800 | OsHIPL1 | Detail |
| C2H3g04588 | 3:25,373,167-25,376,764 | + | C1H3g29365 | CX3g028675 | LOC_Os03g48560 | Os03g0692000 | - | Detail |
| C2H3g07015 | 3:25,381,870-25,383,226 | - | C1H3g22267 | CX3g029610 | LOC_Os03g48570 | Os03g0692100 | - | Detail |
| C2H3g07879 | 3:25,390,356-25,391,856 | - | C1H3g08700 | CX3g030062 | LOC_Os03g48590 | Os03g0692300 | - | Detail |
| C2H3g17678 | 3:25,392,393-25,397,803 | - | C1H3g28949 | CX3g026552 | LOC_Os03g48600 | Os03g0692400 | - | Detail |
| C2H3g10834 | 3:25,401,996-25,407,021 | - | C1H3g19100 | CX3g027632 | LOC_Os03g48610 | Os03g0803600 | - | Detail |
| C2H3g04260 | 3:25,411,785-25,414,127 | - | C1H3g17419 | CX3g025938 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C2H3g14908 | 3:25,416,166-25,416,702 | - | C1H3g28345 | CX3g031343 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C2H3g05966 | 3:25,422,880-25,427,247 | - | C1H3g29633 | CX3g027481 | LOC_Os03g48660 | Os03g0693000 | - | Detail |
| C2H3g10021 | 3:25,445,554-25,446,069 | - | C1H3g04357 | CX3g030139 | LOC_Os03g48710 | Os03g0693400 | - | Detail |
| C2H3g05096 | 3:25,450,418-25,455,000 | + | C1H3g07784 | CX3g027310 | LOC_Os03g48740 | Os03g0693600 | OsIAGT1, OsIAAGLU | Detail |
| C2H3g22251 | 3:25,479,340-25,482,499 | + | C1H3g19279 | CX3g031355 | LOC_Os03g48810 | Os03g0694500 | - | Detail |
| C2H3g26534 | 3:25,494,089-25,501,795 | + | C1H3g26684 | CX3g030087 | LOC_Os03g48850 | Os03g0694900 | - | Detail |
| C2H3g18441 | 3:25,508,980-25,512,890 | + | C1H3g09569 | CX3g027739 | LOC_Os03g48920 | Os03g0695500 | - | Detail |
| C2H3g02189 | 3:25,512,976-25,515,282 | - | C1H3g24942 | CX3g031086 | LOC_Os03g48930 | Os03g0695600 | - | Detail |
| C2H3g02669 | 3:25,516,049-25,526,329 | - | C1H3g15935 | CX3g031322 | LOC_Os03g48940 | Os03g0695700 | - | Detail |
| C2H3g25659 | 3:25,529,271-25,530,179 | + | C1H3g18763 | CX3g027930 | LOC_Os03g48950 | Os03g0696000 | - | Detail |
| C2H3g00519 | 3:25,544,880-25,548,886 | + | C1H3g17032 | CX3g026991 | LOC_Os03g48970 | Os03g0696300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |