| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24297 | 4:28,344,421-28,345,035 | + | C2H4g00672 | CX4g036167 | LOC_Os04g54490 | Os04g0637300 | OsEFP1 | Detail |
| C1H4g14745 | 4:28,346,770-28,354,128 | + | C2H4g25987 | CX4g032005 | LOC_Os04g54500 | Os04g0637400 | - | Detail |
| C1H4g12494 | 4:28,359,800-28,361,477 | - | C2H4g09556 | CX4g033634 | LOC_Os04g54560 | Os04g0638100 | - | Detail |
| C1H4g04104 | 4:28,371,152-28,371,860 | - | C2H4g03681 | CX4g031761 | LOC_Os04g54590 | Os04g0638700 | - | Detail |
| C1H4g09803 | 4:28,383,624-28,383,918 | + | C2H4g04397 | CX4g035252 | LOC_Os04g54610 | Os04g0639000 | - | Detail |
| C1H4g30992 | 4:28,386,786-28,387,248 | + | C2H4g07968 | CX4g036497 | LOC_Os04g54620 | Os04g0639100 | - | Detail |
| C1H4g10736 | 4:28,388,777-28,389,469 | + | C2H4g28500 | CX4g033211 | LOC_Os04g54630 | Os04g0639200 | - | Detail |
| C1H4g01091 | 4:28,390,914-28,393,247 | - | C2H4g06202 | CX4g034099 | LOC_Os04g54640 | Os04g0639300 | - | Detail |
| C1H4g07903 | 4:28,394,150-28,396,068 | - | C2H4g15533 | CX4g031964 | LOC_Os04g54759 | Os04g0640300 | - | Detail |
| C1H4g03927 | 4:28,400,253-28,400,654 | - | - | - | - | - | - | Detail |
| C1H4g22371 | 4:28,404,292-28,411,781 | + | C2H4g02260 | CX4g036105 | LOC_Os04g54790 | Os04g0640500 | - | Detail |
| C1H4g26128 | 4:28,412,516-28,415,595 | - | C2H4g05866 | CX4g035804 | LOC_Os04g54800 | Os04g0640600 | OsSK3 | Detail |
| C1H4g06695 | 4:28,418,683-28,426,052 | - | C2H4g10958 | CX4g034360 | LOC_Os04g54810 | Os04g0640700 | - | Detail |
| C1H4g02933 | 4:28,432,053-28,434,410 | + | C2H4g21502 | CX4g032330 | LOC_Os04g54820 | Os04g0640800 | - | Detail |
| C1H4g19943 | 4:28,441,250-28,450,333 | + | C2H4g03331 | CX4g032488 | LOC_Os04g54840 | Os04g0641000 | - | Detail |
| C1H4g10104 | 4:28,458,029-28,460,155 | + | C2H4g03113 | CX4g034640 | LOC_Os04g54850 | Os04g0641200 | - | Detail |
| C1H4g28360 | 4:28,460,268-28,460,930 | + | C2H4g03113 | CX4g034640 | LOC_Os04g54850 | Os04g0641200 | - | Detail |
| C1H4g08062 | 4:28,465,899-28,469,386 | - | C2H4g12320 | CX4g034636 | LOC_Os04g54870 | Os04g0641400 | - | Detail |
| C1H4g25048 | 4:28,476,577-28,476,991 | - | C2H4g02939 | - | LOC_Os04g54900 | Os04g0641700 | OsILI1 | Detail |
| C1H4g05112 | 4:28,494,512-28,501,946 | - | C2H4g16501 | CX4g035146 | LOC_Os04g54930 | Os04g0642000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g15221 | 3:13,759,306-13,761,198 | - | C1H3g20016 | CX3g026189 | LOC_Os03g27120 | Os03g0388900 | OsMC1 | Detail |
| C2H3g04943 | 3:13,780,074-13,781,487 | - | C1H3g10570 | CX3g025998 | LOC_Os03g27170 | Os03g0389000 | OsMC3 | Detail |
| C2H3g08633 | 3:13,785,102-13,789,396 | - | C1H3g25808 | CX3g029196 | LOC_Os03g27190 | Os03g0389100 | OsMC8 | Detail |
| C2H3g29112 | 3:13,813,246-13,813,518 | - | C1H3g15024 | - | - | Os03g0389175 | - | Detail |
| C2H3g00005 | 3:13,826,049-13,826,309 | - | C1H3g15059 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C2H3g14323 | 3:13,826,803-13,827,772 | - | C1H3g23745 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C2H3g24243 | 3:13,848,887-13,853,227 | + | C1H3g20114 | CX3g025732 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| C2H3g12972 | 3:13,857,326-13,864,732 | + | C1H3g30971 | CX3g028319 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| C2H3g06738 | 3:13,865,728-13,868,014 | - | C1H3g19742 | CX3g027960 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| C2H3g21967 | 3:13,871,749-13,876,328 | - | C1H3g17252 | CX3g031288 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| C2H3g10154 | 3:13,893,466-13,898,070 | + | C1H3g08377 | CX3g029813 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| C2H3g16150 | 3:13,901,043-13,902,954 | + | C1H3g03476 | CX3g025879 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| C2H3g25165 | 3:13,903,891-13,907,205 | + | C1H3g30084 | CX3g025932 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| C2H3g02856 | 3:13,909,187-13,913,015 | + | C1H3g29350 | CX3g027950 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| C2H3g17457 | 3:13,916,645-13,917,868 | + | C1H3g09929 | CX3g026532 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| C2H3g06527 | 3:13,923,209-13,928,534 | + | C1H3g16806 | CX3g028456 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| C2H3g10546 | 3:13,939,602-13,943,256 | - | C1H3g30949 | CX3g028215 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| C2H3g23808 | 3:13,974,875-13,976,837 | - | C1H3g13034 | CX3g030816 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| C2H3g21955 | 3:13,986,454-13,990,854 | + | C1H3g16459 | CX3g030757 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| C2H3g23340 | 3:14,004,359-14,008,083 | - | C1H3g12299 | CX3g027984 | LOC_Os03g27480 | Os03g0392600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |