| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05600 | 4:28,227,690-28,230,496 | - | C2H4g12541 | - | LOC_Os04g54140 | Os04g0634000 | SDRLK-32 | Detail |
| C1H4g00149 | 4:28,231,825-28,235,174 | - | C2H4g05234 | - | LOC_Os04g54180 | Os04g0634400 | SDK10 | Detail |
| C1H4g30311 | 4:28,235,837-28,239,126 | - | C2H4g15094 | - | LOC_Os04g54190 | Os04g0634500 | OsRLCK166 | Detail |
| C1H4g18527 | 4:28,243,953-28,248,770 | + | C2H4g23622 | CX4g034564 | LOC_Os04g54200 | Os04g0634700 | OsDGK1, OsBIDK1 | Detail |
| C1H4g25616 | 4:28,255,387-28,255,647 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g29146 | 4:28,257,341-28,257,946 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g18466 | 4:28,260,067-28,262,206 | - | C2H4g00720 | CX4g036119 | LOC_Os04g54300 | Os04g0635500 | - | Detail |
| C1H4g19305 | 4:28,273,434-28,274,149 | + | C2H4g14023 | CX4g032804 | LOC_Os04g54320 | Os04g0635700 | - | Detail |
| C1H4g09101 | 4:28,274,590-28,277,361 | - | C2H4g17468 | CX4g036509 | LOC_Os04g54330 | Os04g0635800 | - | Detail |
| C1H4g30286 | 4:28,277,548-28,283,408 | + | C2H4g13240 | CX4g032454 | LOC_Os04g54340 | Os04g0635900 | OsMRE11, MRE11 | Detail |
| C1H4g21961 | 4:28,283,484-28,286,836 | - | C2H4g02572 | CX4g032200 | LOC_Os04g54350 | Os04g0636000 | - | Detail |
| C1H4g08947 | 4:28,288,839-28,291,396 | + | C2H4g10937 | CX4g036026 | LOC_Os04g54360 | Os04g0636100 | - | Detail |
| C1H4g20538 | 4:28,291,924-28,293,953 | - | C2H4g03815 | CX4g034633 | LOC_Os04g54370 | Os04g0636200 | - | Detail |
| C1H4g15693 | 4:28,296,012-28,298,780 | - | C2H4g22493 | CX4g032673 | LOC_Os04g54380 | Os04g0636300 | - | Detail |
| C1H4g21474 | 4:28,298,581-28,300,889 | + | C2H4g23314 | CX4g035086 | LOC_Os04g54390 | Os04g0636400 | - | Detail |
| C1H4g17142 | 4:28,302,241-28,305,452 | + | C2H4g20784 | CX4g031535 | LOC_Os04g54400 | Os04g0636500 | - | Detail |
| C1H4g09780 | 4:28,305,882-28,313,738 | - | C2H4g25587 | CX4g033827 | LOC_Os04g54410 | Os04g0636600 | - | Detail |
| C1H4g08442 | 4:28,314,600-28,317,284 | - | C2H4g20756 | CX4g035918 | LOC_Os04g54420 | Os04g0636700 | - | Detail |
| C1H4g15395 | 4:28,319,221-28,327,835 | - | C2H4g00944 | CX4g036410 | LOC_Os04g54430 | Os04g0636800 | - | Detail |
| C1H4g07866 | 4:28,336,171-28,341,106 | + | C2H4g15249 | CX4g034131 | LOC_Os04g54474 | Os04g0637000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08716 | 3:16,925,345-16,925,834 | + | C1H3g16844 | - | LOC_Os03g32330 | Os03g0438400 | - | Detail |
| C2H3g25901 | 3:16,975,364-16,976,902 | + | C1H3g27126 | CX3g028421 | LOC_Os03g32470 | Os03g0439500 | - | Detail |
| C2H3g00828 | 3:16,982,325-16,983,125 | - | C1H3g10649 | CX3g029614 | - | Os03g0114400 | - | Detail |
| C2H3g13437 | 3:17,025,684-17,027,541 | - | C1H3g06834 | CX3g025406 | LOC_Os03g32490 | Os03g0439700 | - | Detail |
| C2H3g15363 | 3:17,032,739-17,034,277 | + | C1H3g21761 | CX3g028175 | LOC_Os03g32499 | Os03g0439800 | - | Detail |
| C2H3g25565 | 3:17,052,831-17,055,209 | + | C1H3g11595 | CX3g026641 | LOC_Os03g32580 | Os03g0440900 | - | Detail |
| C2H3g20190 | 3:17,055,536-17,064,832 | - | C1H3g28711 | CX3g027696 | LOC_Os03g32590 | Os03g0441000 | - | Detail |
| C2H3g11825 | 3:17,074,561-17,077,071 | - | C1H3g12283 | CX3g025857 | LOC_Os03g32620 | Os03g0441400 | - | Detail |
| C2H3g07036 | 3:17,168,713-17,169,390 | + | C1H3g09033 | CX3g025420 | LOC_Os03g32790 | Os03g0442900 | - | Detail |
| C2H3g18530 | 3:17,316,196-17,316,901 | - | C1H3g08585 | CX3g029665 | LOC_Os03g33090 | Os03g0445700 | OsLBD37 | Detail |
| C2H3g30048 | 3:17,359,090-17,362,124 | + | C1H3g15486 | CX3g024950 | - | - | - | Detail |
| C2H3g30096 | 3:17,427,330-17,434,816 | - | C1H3g26264 | CX3g029845 | LOC_Os03g33580 | Os03g0448600 | - | Detail |
| C2H3g02896 | 3:17,446,012-17,452,485 | - | C1H3g27459 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C2H3g09597 | 3:17,504,409-17,508,494 | + | C1H3g11876 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C2H3g06387 | 3:17,573,773-17,577,321 | - | C1H3g10349 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g24450 | 3:17,583,817-17,584,173 | - | C1H3g26549 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g04259 | 3:17,695,517-17,699,643 | - | C1H3g16808 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C2H3g26683 | 3:17,735,716-17,736,909 | + | - | CX3g027872 | - | Os03g0454300 | - | Detail |
| C2H3g20904 | 3:17,751,779-17,752,998 | + | C1H3g08800 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C2H3g06895 | 3:17,755,871-17,758,744 | + | C1H3g13672 | CX3g026131 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |