| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05600 | 4:28,227,690-28,230,496 | - | C2H4g12541 | - | LOC_Os04g54140 | Os04g0634000 | SDRLK-32 | Detail |
| C1H4g00149 | 4:28,231,825-28,235,174 | - | C2H4g05234 | - | LOC_Os04g54180 | Os04g0634400 | SDK10 | Detail |
| C1H4g30311 | 4:28,235,837-28,239,126 | - | C2H4g15094 | - | LOC_Os04g54190 | Os04g0634500 | OsRLCK166 | Detail |
| C1H4g18527 | 4:28,243,953-28,248,770 | + | C2H4g23622 | CX4g034564 | LOC_Os04g54200 | Os04g0634700 | OsDGK1, OsBIDK1 | Detail |
| C1H4g25616 | 4:28,255,387-28,255,647 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g29146 | 4:28,257,341-28,257,946 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g18466 | 4:28,260,067-28,262,206 | - | C2H4g00720 | CX4g036119 | LOC_Os04g54300 | Os04g0635500 | - | Detail |
| C1H4g19305 | 4:28,273,434-28,274,149 | + | C2H4g14023 | CX4g032804 | LOC_Os04g54320 | Os04g0635700 | - | Detail |
| C1H4g09101 | 4:28,274,590-28,277,361 | - | C2H4g17468 | CX4g036509 | LOC_Os04g54330 | Os04g0635800 | - | Detail |
| C1H4g30286 | 4:28,277,548-28,283,408 | + | C2H4g13240 | CX4g032454 | LOC_Os04g54340 | Os04g0635900 | OsMRE11, MRE11 | Detail |
| C1H4g21961 | 4:28,283,484-28,286,836 | - | C2H4g02572 | CX4g032200 | LOC_Os04g54350 | Os04g0636000 | - | Detail |
| C1H4g08947 | 4:28,288,839-28,291,396 | + | C2H4g10937 | CX4g036026 | LOC_Os04g54360 | Os04g0636100 | - | Detail |
| C1H4g20538 | 4:28,291,924-28,293,953 | - | C2H4g03815 | CX4g034633 | LOC_Os04g54370 | Os04g0636200 | - | Detail |
| C1H4g15693 | 4:28,296,012-28,298,780 | - | C2H4g22493 | CX4g032673 | LOC_Os04g54380 | Os04g0636300 | - | Detail |
| C1H4g21474 | 4:28,298,581-28,300,889 | + | C2H4g23314 | CX4g035086 | LOC_Os04g54390 | Os04g0636400 | - | Detail |
| C1H4g17142 | 4:28,302,241-28,305,452 | + | C2H4g20784 | CX4g031535 | LOC_Os04g54400 | Os04g0636500 | - | Detail |
| C1H4g09780 | 4:28,305,882-28,313,738 | - | C2H4g25587 | CX4g033827 | LOC_Os04g54410 | Os04g0636600 | - | Detail |
| C1H4g08442 | 4:28,314,600-28,317,284 | - | C2H4g20756 | CX4g035918 | LOC_Os04g54420 | Os04g0636700 | - | Detail |
| C1H4g15395 | 4:28,319,221-28,327,835 | - | C2H4g00944 | CX4g036410 | LOC_Os04g54430 | Os04g0636800 | - | Detail |
| C1H4g07866 | 4:28,336,171-28,341,106 | + | C2H4g15249 | CX4g034131 | LOC_Os04g54474 | Os04g0637000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g12275 | 1:4,873,374-4,873,817 | - | C1H1g19001 | CX1g000926 | LOC_Os01g10470 | Os01g0201400 | OsRALF17 | Detail |
| C2H1g03634 | 1:4,876,589-4,877,474 | - | C1H1g16523 | CX1g002271 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| C2H1g24699 | 1:4,882,789-4,883,106 | - | C1H1g23585 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g28525 | 1:4,883,213-4,883,868 | - | C1H1g14400 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g13721 | 1:4,892,989-4,895,492 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0886200 | - | Detail |
| C2H1g12459 | 1:4,900,735-4,900,998 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |
| C2H1g19665 | 1:4,911,955-4,917,635 | - | C1H1g13227 | CX1g003430 | LOC_Os01g10520 | Os01g0201800 | - | Detail |
| C2H1g09694 | 1:4,923,671-4,931,460 | - | C1H1g22249 | CX1g006334 | LOC_Os01g10530 | Os01g0201900 | - | Detail |
| C2H1g26674 | 1:4,964,371-4,965,624 | + | C1H1g17903 | CX1g001589 | LOC_Os01g10580 | Os01g0202500 | - | Detail |
| C2H1g25575 | 1:4,971,914-4,972,368 | + | C1H1g18982 | - | - | Os01g0202601 | - | Detail |
| C2H1g11027 | 1:4,978,392-4,981,573 | + | C1H1g22813 | CX1g006160 | LOC_Os01g10590 | Os01g0202700 | - | Detail |
| C2H1g23331 | 1:4,988,516-4,991,314 | - | C1H1g30411 | CX1g001315 | LOC_Os01g10600 | Os01g0202800 | OsNIP1;2 | Detail |
| C2H1g21358 | 1:4,992,805-4,994,882 | - | C1H1g09441 | CX1g005369 | LOC_Os01g10610 | Os01g0203000 | - | Detail |
| C2H1g27421 | 1:5,000,254-5,002,198 | - | C1H1g13068 | CX1g004390 | LOC_Os01g10630 | Os01g0203300 | - | Detail |
| C2H1g21431 | 1:5,008,131-5,008,454 | + | - | CX1g004397 | LOC_Os01g10640 | Os01g0203400 | - | Detail |
| C2H1g16935 | 1:5,020,559-5,022,124 | - | C1H1g00815 | CX1g002059 | LOC_Os01g10680 | Os01g0203800 | - | Detail |
| C2H1g16705 | 1:5,041,036-5,045,561 | - | C1H1g30796 | CX1g005785 | LOC_Os01g10690 | Os01g0204000 | - | Detail |
| C2H1g09104 | 1:5,049,551-5,061,780 | - | C1H1g01843 | - | - | - | - | Detail |
| C2H1g25154 | 1:5,062,654-5,063,064 | - | - | CX1g004812 | LOC_Os01g10740 | - | - | Detail |
| C2H1g14777 | 1:5,063,389-5,063,692 | + | C1H1g24281 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |