| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05600 | 4:28,227,690-28,230,496 | - | C2H4g12541 | - | LOC_Os04g54140 | Os04g0634000 | SDRLK-32 | Detail |
| C1H4g00149 | 4:28,231,825-28,235,174 | - | C2H4g05234 | - | LOC_Os04g54180 | Os04g0634400 | SDK10 | Detail |
| C1H4g30311 | 4:28,235,837-28,239,126 | - | C2H4g15094 | - | LOC_Os04g54190 | Os04g0634500 | OsRLCK166 | Detail |
| C1H4g18527 | 4:28,243,953-28,248,770 | + | C2H4g23622 | CX4g034564 | LOC_Os04g54200 | Os04g0634700 | OsDGK1, OsBIDK1 | Detail |
| C1H4g25616 | 4:28,255,387-28,255,647 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g29146 | 4:28,257,341-28,257,946 | - | C2H4g11178 | CX4g036119 | LOC_Os04g54240 | Os04g0635100 | - | Detail |
| C1H4g18466 | 4:28,260,067-28,262,206 | - | C2H4g00720 | CX4g036119 | LOC_Os04g54300 | Os04g0635500 | - | Detail |
| C1H4g19305 | 4:28,273,434-28,274,149 | + | C2H4g14023 | CX4g032804 | LOC_Os04g54320 | Os04g0635700 | - | Detail |
| C1H4g09101 | 4:28,274,590-28,277,361 | - | C2H4g17468 | CX4g036509 | LOC_Os04g54330 | Os04g0635800 | - | Detail |
| C1H4g30286 | 4:28,277,548-28,283,408 | + | C2H4g13240 | CX4g032454 | LOC_Os04g54340 | Os04g0635900 | OsMRE11, MRE11 | Detail |
| C1H4g21961 | 4:28,283,484-28,286,836 | - | C2H4g02572 | CX4g032200 | LOC_Os04g54350 | Os04g0636000 | - | Detail |
| C1H4g08947 | 4:28,288,839-28,291,396 | + | C2H4g10937 | CX4g036026 | LOC_Os04g54360 | Os04g0636100 | - | Detail |
| C1H4g20538 | 4:28,291,924-28,293,953 | - | C2H4g03815 | CX4g034633 | LOC_Os04g54370 | Os04g0636200 | - | Detail |
| C1H4g15693 | 4:28,296,012-28,298,780 | - | C2H4g22493 | CX4g032673 | LOC_Os04g54380 | Os04g0636300 | - | Detail |
| C1H4g21474 | 4:28,298,581-28,300,889 | + | C2H4g23314 | CX4g035086 | LOC_Os04g54390 | Os04g0636400 | - | Detail |
| C1H4g17142 | 4:28,302,241-28,305,452 | + | C2H4g20784 | CX4g031535 | LOC_Os04g54400 | Os04g0636500 | - | Detail |
| C1H4g09780 | 4:28,305,882-28,313,738 | - | C2H4g25587 | CX4g033827 | LOC_Os04g54410 | Os04g0636600 | - | Detail |
| C1H4g08442 | 4:28,314,600-28,317,284 | - | C2H4g20756 | CX4g035918 | LOC_Os04g54420 | Os04g0636700 | - | Detail |
| C1H4g15395 | 4:28,319,221-28,327,835 | - | C2H4g00944 | CX4g036410 | LOC_Os04g54430 | Os04g0636800 | - | Detail |
| C1H4g07866 | 4:28,336,171-28,341,106 | + | C2H4g15249 | CX4g034131 | LOC_Os04g54474 | Os04g0637000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g07939 | 1:30,166,036-30,168,196 | - | C1H1g19538 | CX1g005593 | LOC_Os01g58730 | Os01g0801500 | - | Detail |
| C2H1g30108 | 1:30,168,609-30,171,707 | - | C1H1g05474 | CX1g003950 | LOC_Os01g58740 | Os01g0801600 | - | Detail |
| C2H1g26051 | 1:30,172,897-30,176,258 | - | C1H1g14045 | CX1g005695 | LOC_Os01g58750 | Os01g0801700 | OsGCD1 | Detail |
| C2H1g19105 | 1:30,182,459-30,184,419 | - | - | - | - | - | - | Detail |
| C2H1g24587 | 1:30,197,757-30,202,818 | + | C1H1g01326 | CX1g000361 | LOC_Os01g58790 | Os01g0802100 | OsIspE, IspE, OsCMK, CMK | Detail |
| C2H1g08686 | 1:30,216,620-30,218,774 | - | C1H1g15075 | CX1g002565 | LOC_Os01g58860 | Os01g0802700 | OsPIN9 | Detail |
| C2H1g30330 | 1:30,232,946-30,233,720 | + | C1H1g24422 | CX1g002172 | LOC_Os01g58890 | Os01g0803200 | - | Detail |
| C2H1g25597 | 1:30,243,490-30,245,237 | - | C1H1g07293 | CX1g000223 | LOC_Os01g58910 | Os01g0803300 | - | Detail |
| C2H1g05023 | 1:30,257,504-30,259,030 | + | C1H1g24602 | CX1g005013 | LOC_Os01g58960 | Os01g0803800 | CYP94D12, OsCYP94D12 | Detail |
| C2H1g26033 | 1:30,261,999-30,263,537 | + | C1H1g19345 | CX1g005013 | LOC_Os01g58970 | Os01g0803900 | CYP94D11, OsCYP94D11, OsCYPq1 | Detail |
| C2H1g28126 | 1:30,286,808-30,288,426 | - | C1H1g26715 | CX1g005195 | LOC_Os01g59060 | Os01g0805000 | - | Detail |
| C2H1g18483 | 1:30,291,209-30,292,424 | - | C1H1g02848 | CX1g000028 | LOC_Os01g59080 | Os01g0805200 | - | Detail |
| C2H1g25136 | 1:30,292,535-30,298,269 | + | C1H1g13654 | CX1g000520 | LOC_Os01g59100 | Os01g0805400 | Os6 | Detail |
| C2H1g18311 | 1:30,299,357-30,299,566 | - | C1H12g00195 | - | - | - | - | Detail |
| C2H1g25416 | 1:30,299,605-30,300,492 | - | - | CX1g005761 | - | - | - | Detail |
| C2H1g00011 | 1:30,300,738-30,301,334 | + | C1H1g23718 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C2H1g05127 | 1:30,302,551-30,303,204 | + | C1H1g23718 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C2H1g05794 | 1:30,303,559-30,306,662 | - | C1H1g31482 | CX1g004982 | LOC_Os01g59120 | Os01g0805600 | Orysa;CycB1;1 | Detail |
| C2H1g03484 | 1:30,307,605-30,313,872 | - | C1H1g30942 | CX1g001600 | LOC_Os01g59130 | Os01g0805700 | - | Detail |
| C2H1g17768 | 1:30,315,471-30,319,142 | - | C1H1g01953 | CX1g000155 | LOC_Os01g59140 | Os01g0805800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |