| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g20793 | 4:27,996,745-28,003,715 | + | C2H4g25755 | CX4g033819 | LOC_Os04g53630 | Os04g0628200 | - | Detail |
| C1H4g00150 | 4:28,007,543-28,011,390 | - | C2H4g12158 | CX4g035421 | LOC_Os04g53660 | Os04g0628400 | - | Detail |
| C1H4g16750 | 4:28,012,532-28,022,937 | - | C2H4g14925 | CX4g031603 | LOC_Os04g53670 | Os04g0628600 | - | Detail |
| C1H4g04700 | 4:28,026,258-28,028,071 | + | C2H4g23818 | CX4g034974 | LOC_Os04g53680 | Os04g0628900 | - | Detail |
| C1H4g12167 | 4:28,029,058-28,031,757 | + | C2H4g29403 | CX4g036640 | LOC_Os04g53690 | Os04g0629000 | - | Detail |
| C1H4g18446 | 4:28,032,211-28,036,823 | - | C2H4g22771 | CX4g034413 | LOC_Os04g53700 | Os04g0629100 | - | Detail |
| C1H4g24587 | 4:28,038,332-28,039,233 | + | C2H4g09379 | CX4g036336 | LOC_Os04g53710 | Os04g0629200 | - | Detail |
| C1H4g06832 | 4:28,040,112-28,045,555 | - | C2H4g19513 | CX4g032888 | LOC_Os04g53720 | Os04g0629300 | OsCHR715, CHR715 | Detail |
| C1H4g16584 | 4:28,048,137-28,051,341 | - | C2H4g17413 | CX4g034863 | LOC_Os04g53730 | Os04g0629500 | - | Detail |
| C1H4g15851 | 4:28,054,170-28,059,373 | - | C2H4g19571 | CX4g031785 | LOC_Os04g53760 | Os04g0629700 | - | Detail |
| C1H4g29594 | 4:28,063,848-28,068,831 | + | C2H4g13776 | CX4g033909 | LOC_Os04g53770 | Os04g0630000 | - | Detail |
| C1H4g05143 | 4:28,069,148-28,072,204 | + | C2H4g28555 | - | LOC_Os04g53780 | Os04g0630100 | - | Detail |
| C1H4g17189 | 4:28,072,378-28,072,902 | + | C2H4g01017 | - | LOC_Os04g53800 | Os04g0630300 | - | Detail |
| C1H4g12453 | 4:28,072,936-28,073,139 | + | C2H4g09464 | - | LOC_Os04g53800 | Os04g0630300 | - | Detail |
| C1H4g10023 | 4:28,075,252-28,081,556 | + | C2H4g11838 | - | LOC_Os04g53800 | Os04g0630300 | - | Detail |
| C1H4g09076 | 4:28,089,882-28,091,468 | + | C2H4g17007 | - | LOC_Os04g53810 | Os04g0630400 | - | Detail |
| C1H4g26963 | 4:28,093,695-28,096,155 | + | C2H4g05751 | - | LOC_Os04g53850 | Os04g0630800 | - | Detail |
| C1H4g07842 | 4:28,098,956-28,100,995 | + | C2H4g23977 | - | LOC_Os04g53920 | Os04g0631000 | - | Detail |
| C1H4g18028 | 4:28,103,764-28,105,291 | + | C2H4g23977 | - | LOC_Os04g53920 | Os04g0631000 | - | Detail |
| C1H4g25664 | 4:28,105,746-28,106,414 | + | C2H4g15838 | - | LOC_Os04g53920 | Os04g0631000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06482 | 2:29,371,707-29,373,467 | + | C1H2g24237 | CX2g020266 | LOC_Os02g52480 | Os02g0762400 | KRP1, OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI | Detail |
| C2H2g14994 | 2:29,379,968-29,380,435 | - | - | CX2g020064 | LOC_Os02g52490 | Os02g0762600 | SGL1 | Detail |
| C2H2g29446 | 2:29,385,573-29,394,313 | - | C1H2g04159 | CX2g022518 | LOC_Os02g52510 | Os02g0762800 | OsRad54 | Detail |
| C2H2g01751 | 2:29,397,002-29,397,304 | - | - | CX2g023245 | LOC_Os02g52540 | - | - | Detail |
| C2H2g11954 | 2:29,401,275-29,402,154 | + | C1H2g10187 | CX2g023141 | LOC_Os02g52550 | Os02g0763000 | OsCNR1, TGW2, OsFWL1 | Detail |
| C2H2g00538 | 2:29,415,549-29,416,080 | + | C1H2g21759 | - | - | - | - | Detail |
| C2H2g18956 | 2:29,419,129-29,422,357 | + | C1H2g09761 | CX2g024148 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| C2H2g03175 | 2:29,423,273-29,426,274 | + | C1H2g15844 | CX2g024148 | LOC_Os02g52590 | Os02g0763800 | - | Detail |
| C2H2g23310 | 2:29,426,521-29,426,997 | + | C1H2g15324 | - | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g02605 | 2:29,429,194-29,432,334 | + | C1H2g26295 | CX2g023343 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g18172 | 2:29,435,564-29,438,153 | + | C1H2g14291 | CX2g019855 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| C2H2g07475 | 2:29,442,236-29,444,534 | + | C1H2g16896 | CX2g023343 | LOC_Os02g52640 | Os02g0764400 | - | Detail |
| C2H2g26785 | 2:29,444,959-29,446,785 | - | C1H2g16728 | CX2g022219 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| C2H2g22917 | 2:29,448,988-29,449,743 | - | C1H2g23870 | CX2g021656 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| C2H2g26543 | 2:29,462,389-29,463,967 | + | C1H2g10581 | CX2g018991 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| C2H2g29404 | 2:29,466,319-29,467,913 | - | C1H2g08973 | CX2g021489 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| C2H2g24763 | 2:29,471,454-29,472,131 | - | C1H2g26635 | CX2g019501 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| C2H2g20003 | 2:29,474,844-29,478,669 | - | C1H2g13987 | CX2g022397 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| C2H2g16702 | 2:29,485,155-29,485,984 | + | C1H2g23770 | CX2g019269 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| C2H2g14916 | 2:29,487,761-29,492,896 | - | C1H2g16420 | CX2g021391 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |