| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12302 | 4:27,689,078-27,689,997 | + | C2H4g27530 | CX4g036439 | LOC_Os04g50030 | Os04g0590200 | OsAHL9 | Detail |
| C1H4g16693 | 4:27,695,594-27,697,201 | + | C2H4g00430 | CX4g031650 | LOC_Os04g53120 | Os04g0622600 | Xa1 | Detail |
| C1H4g15194 | 4:27,698,606-27,699,806 | - | C2H4g22065 | CX4g035247 | LOC_Os04g53130 | Os04g0623100 | - | Detail |
| C1H4g02455 | 4:27,713,215-27,713,869 | - | C2H4g00348 | CX4g033709 | - | Os04g0622501 | - | Detail |
| C1H4g21467 | 4:27,726,099-27,727,384 | + | C2H4g08898 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g07870 | 4:27,729,783-27,731,823 | - | C2H4g22065 | CX4g035247 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| C1H4g31518 | 4:27,735,782-27,741,577 | - | C2H4g13216 | CX4g033545 | LOC_Os04g53190 | Os04g0623300 | - | Detail |
| C1H4g28735 | 4:27,749,842-27,752,577 | - | C2H4g00578 | CX4g035759 | LOC_Os04g53200 | Os04g0623400 | - | Detail |
| C1H4g05306 | 4:27,758,196-27,761,940 | + | C2H4g14246 | CX4g032318 | LOC_Os04g53210 | Os04g0623500 | - | Detail |
| C1H4g08239 | 4:27,762,386-27,767,160 | + | C2H4g02179 | CX4g032896 | LOC_Os04g53214 | Os04g0623500 | - | Detail |
| C1H4g06497 | 4:27,768,235-27,770,355 | + | C2H4g17188 | CX4g036610 | LOC_Os04g53220 | Os04g0623700 | - | Detail |
| C1H4g30464 | 4:27,771,258-27,774,047 | + | C2H4g03695 | CX4g033220 | LOC_Os04g53230 | Os04g0623800 | - | Detail |
| C1H4g02029 | 4:27,783,580-27,785,753 | - | C2H4g14747 | CX4g034233 | LOC_Os04g53240 | Os04g0624000 | OsATG8b | Detail |
| C1H4g27906 | 4:27,789,431-27,792,180 | + | C2H4g05270 | CX4g032571 | LOC_Os04g53300 | Os04g0624500 | BH1, Phr1 | Detail |
| C1H4g07313 | 4:27,792,322-27,800,310 | - | C2H4g11126 | CX4g035390 | LOC_Os04g53310 | Os04g0624600 | - | Detail |
| C1H4g13571 | 4:27,805,507-27,806,976 | - | C2H4g28602 | CX4g036647 | LOC_Os04g53330 | Os04g0624800 | - | Detail |
| C1H4g00227 | 4:27,810,761-27,814,396 | - | C2H4g19898 | CX4g033272 | LOC_Os04g53350 | Os04g0625000 | - | Detail |
| C1H4g29072 | 4:27,818,833-27,822,452 | + | C2H4g13433 | CX4g031861 | LOC_Os04g53360 | Os04g0625100 | - | Detail |
| C1H4g19977 | 4:27,827,051-27,828,490 | + | C2H4g25129 | CX4g033103 | LOC_Os04g53370 | Os04g0625200 | - | Detail |
| C1H4g19059 | 4:27,829,014-27,841,558 | - | C2H4g13881 | CX4g032976 | LOC_Os04g53380 | Os04g0625350 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g29177 | 2:27,727,327-27,728,047 | - | C1H2g10199 | CX2g023592 | LOC_Os02g49410 | Os02g0725900 | HAP3K, OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41 | Detail |
| C2H2g08490 | 2:27,734,464-27,735,258 | - | - | CX2g022300 | LOC_Os02g49420 | Os02g0726000 | - | Detail |
| C2H2g29636 | 2:27,742,313-27,743,152 | - | C1H2g09874 | CX2g023852 | LOC_Os02g49440 | Os02g0726300 | - | Detail |
| C2H2g05677 | 2:27,754,641-27,758,029 | + | C1H2g05214 | CX2g019656 | LOC_Os02g49450 | Os02g0726400 | - | Detail |
| C2H2g30015 | 2:27,761,753-27,765,830 | + | C1H2g12431 | CX2g023556 | LOC_Os02g49460 | Os02g0726500 | - | Detail |
| C2H2g00814 | 2:27,768,081-27,768,764 | + | - | CX2g024926 | LOC_Os02g49470 | Os02g0726600 | - | Detail |
| C2H2g09813 | 2:27,769,254-27,771,661 | - | C1H2g21836 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| C2H2g17575 | 2:27,776,478-27,778,991 | - | C1H2g12455 | CX2g022260 | LOC_Os02g49510 | Os02g0727100 | - | Detail |
| C2H2g05996 | 2:27,780,509-27,785,880 | + | C1H2g29396 | CX2g024123 | LOC_Os02g49520 | Os02g0727300 | - | Detail |
| C2H2g05669 | 2:27,788,543-27,790,875 | - | C1H2g07912 | CX2g019961 | LOC_Os02g49530 | Os02g0727500 | - | Detail |
| C2H2g19256 | 2:27,794,670-27,795,602 | + | C1H2g26668 | CX2g023170 | LOC_Os02g49550 | Os02g0727700 | - | Detail |
| C2H2g25351 | 2:27,807,255-27,807,764 | + | C1H2g05141 | CX2g019013 | LOC_Os02g49560 | Os02g0728001 | bZIP43 | Detail |
| C2H2g28910 | 2:27,809,196-27,817,139 | - | C1H2g01405 | CX2g021134 | LOC_Os02g49570 | Os02g0728100 | - | Detail |
| C2H2g03568 | 2:27,818,993-27,819,614 | + | C1H2g31094 | CX2g022512 | LOC_Os02g49590 | Os02g0728300 | - | Detail |
| C2H2g16287 | 2:27,820,522-27,825,782 | + | C1H2g31094 | CX2g022649 | LOC_Os02g49590 | Os02g0728300 | - | Detail |
| C2H2g29677 | 2:27,820,568-27,821,645 | - | - | CX3g030699 | - | - | - | Detail |
| C2H2g04353 | 2:27,827,242-27,830,998 | - | C1H2g01710 | CX2g020763 | LOC_Os02g49600 | Os02g0728500 | - | Detail |
| C2H2g01821 | 2:27,834,839-27,836,806 | - | C1H2g15124 | CX2g020190 | LOC_Os02g49610 | Os02g0728600 | - | Detail |
| C2H2g11437 | 2:27,837,325-27,840,366 | + | C1H2g22353 | CX2g023333 | LOC_Os02g49620 | Os02g0728700 | - | Detail |
| C2H2g09268 | 2:27,841,086-27,847,518 | + | C1H2g30542 | CX2g023611 | LOC_Os02g49640 | Os02g0728800 | OsTET3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |