| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24139 | 4:27,479,776-27,489,811 | + | C2H4g19928 | CX4g032286 | LOC_Os04g52940 | Os04g0620500 | - | Detail |
| C1H4g13879 | 4:27,490,059-27,490,588 | - | C2H4g26723 | CX4g031575 | LOC_Os04g52950 | Os04g0620600 | - | Detail |
| C1H4g14650 | 4:27,494,601-27,501,705 | + | C2H4g15421 | CX4g033766 | LOC_Os04g52960 | Os04g0620700 | OsNUC1-S | Detail |
| C1H4g19711 | 4:27,504,206-27,512,953 | + | C2H4g07456 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C1H4g00045 | 4:27,513,607-27,513,831 | + | C2H4g09472 | - | - | - | - | Detail |
| C1H4g13741 | 4:27,514,785-27,517,963 | + | C2H4g15342 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C1H4g10658 | 4:27,519,574-27,520,708 | + | C2H4g09962 | CX4g035632 | LOC_Os04g53040 | Os04g0621300 | - | Detail |
| C1H4g28793 | 4:27,557,899-27,565,445 | + | C2H4g19695 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g02884 | 4:27,565,833-27,568,284 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| C1H4g09095 | 4:27,568,360-27,568,789 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53070 | Os04g0622000 | - | Detail |
| C1H4g00692 | 4:27,574,950-27,580,478 | + | C2H4g26666 | CX4g034662 | LOC_Os04g53050 | Os04g0621700 | PiPR1 | Detail |
| C1H4g30712 | 4:27,581,737-27,584,695 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53130 | Os04g0622800 | - | Detail |
| C1H4g12671 | 4:27,605,310-27,605,595 | - | - | - | - | Os04g0621650 | - | Detail |
| C1H4g26346 | 4:27,610,067-27,611,351 | + | C2H4g08898 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g15103 | 4:27,637,985-27,642,195 | + | C2H4g04467 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g31657 | 4:27,644,325-27,645,216 | - | C2H4g22065 | CX4g035590 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| C1H4g11379 | 4:27,657,426-27,658,157 | + | C2H4g25020 | CX4g034503 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g02998 | 4:27,660,764-27,664,703 | - | - | - | - | - | - | Detail |
| C1H4g08540 | 4:27,679,869-27,680,540 | + | C2H4g26666 | CX4g031650 | LOC_Os04g53120 | Os04g0622600 | Xa1 | Detail |
| C1H4g22346 | 4:27,682,912-27,683,653 | - | C2H4g26972 | CX4g035247 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06471 | 1:38,256,733-38,261,732 | - | C1H1g31840 | CX1g001384 | - | - | - | Detail |
| C2H1g27116 | 1:38,263,067-38,266,738 | + | C1H1g26867 | CX1g001353 | LOC_Os01g74640 | Os01g0978000 | OsUCP1 | Detail |
| C2H1g18952 | 1:38,268,703-38,274,072 | - | C1H1g06588 | CX1g004874 | LOC_Os01g74650 | Os01g0978100 | - | Detail |
| C2H1g23413 | 1:38,280,940-38,281,923 | + | C1H1g16241 | CX1g002707 | LOC_Os01g74660 | Os01g0978400 | - | Detail |
| C2H10g06876 | 10:32,383-33,144 | + | C1H10g04037 | - | - | Os10g0100200 | - | Detail |
| C2H10g10175 | 10:33,557-46,360 | - | C1H10g10615 | CX10g007625 | LOC_Os10g01044 | Os10g0100300 | - | Detail |
| C2H10g03638 | 10:64,229-71,091 | + | C1H10g12715 | CX10g008235 | LOC_Os10g01060 | Os10g0100500 | - | Detail |
| C2H10g09829 | 10:129,958-131,890 | - | C1H12g03401 | - | - | - | - | Detail |
| C2H10g03040 | 10:149,381-150,322 | - | C1H10g01786 | CX10g009692 | LOC_Os10g01080 | Os10g0100700 | OsPDX1.2 | Detail |
| C2H10g29939 | 10:171,219-173,645 | + | C1H10g00834 | CX10g010378 | LOC_Os10g01100 | Os10g0101000 | SDRLK-44 | Detail |
| C2H10g13492 | 10:194,898-197,428 | - | C1H10g23663 | CX10g008057 | LOC_Os10g01110 | Os10g0101100 | - | Detail |
| C2H10g26137 | 10:210,919-218,007 | - | C1H10g17975 | CX10g009812 | LOC_Os10g01134 | Os10g0101200 | SCP45, OsSCP45, OsSCP46, SCP46 | Detail |
| C2H10g07312 | 10:240,492-240,941 | + | C1H2g03215 | CX2g024115 | - | - | - | Detail |
| C2H10g06494 | 10:294,697-295,758 | - | C1H10g10888 | CX10g010129 | LOC_Os10g01290 | Os10g0102400 | - | Detail |
| C2H10g14615 | 10:310,986-317,483 | + | C1H10g10334 | CX10g008814 | LOC_Os10g01380 | Os10g0102900 | - | Detail |
| C2H10g02203 | 10:330,405-333,453 | - | C1H10g06516 | CX10g010069 | LOC_Os10g06140 | Os10g0103140 | - | Detail |
| C2H10g20902 | 10:372,399-373,931 | - | C1H10g15181 | CX10g007797 | LOC_Os10g01470 | Os10g0103700 | - | Detail |
| C2H10g05016 | 10:390,083-395,962 | - | C1H10g21883 | CX10g008534 | LOC_Os10g01480 | Os10g0103800 | - | Detail |
| C2H10g23358 | 10:407,716-407,886 | - | C1H10g30809 | CX10g007465 | LOC_Os10g01500 | Os10g0104000 | - | Detail |
| C2H10g24023 | 10:421,458-422,739 | + | C1H10g15868 | CX10g010145 | LOC_Os10g01530 | Os10g0104300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |