| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g19784 | 4:27,335,340-27,336,862 | - | C2H4g04663 | CX4g035396 | LOC_Os04g52720 | Os04g0617900 | - | Detail |
| C1H4g16144 | 4:27,341,358-27,345,597 | + | C2H4g20761 | CX4g036359 | - | - | - | Detail |
| C1H4g21738 | 4:27,347,008-27,350,734 | + | C2H4g14147 | CX4g032842 | LOC_Os04g52730 | Os04g0618200 | - | Detail |
| C1H4g28262 | 4:27,354,171-27,354,467 | + | C2H4g20866 | CX4g034575 | LOC_Os04g52750 | Os04g0618400 | - | Detail |
| C1H4g01403 | 4:27,355,456-27,359,541 | - | C2H4g09538 | CX4g035558 | LOC_Os04g52760 | Os04g0618500 | - | Detail |
| C1H4g16234 | 4:27,361,688-27,362,774 | + | C2H4g06850 | CX4g034460 | LOC_Os04g52770 | Os04g0618600 | PIF1 | Detail |
| C1H4g28199 | 4:27,363,964-27,368,068 | - | C2H4g10397 | CX4g034704 | LOC_Os04g52780 | Os04g0618700 | OsFLS2 | Detail |
| C1H4g22303 | 4:27,382,282-27,385,360 | - | C2H4g00816 | CX4g036144 | LOC_Os04g52810 | Os04g0619000 | ONAC083 | Detail |
| C1H4g07288 | 4:27,389,779-27,391,289 | + | - | - | LOC_Os04g52820 | - | - | Detail |
| C1H4g06933 | 4:27,391,734-27,392,098 | + | C2H4g08987 | CX4g032452 | - | - | - | Detail |
| C1H4g18636 | 4:27,400,694-27,403,858 | + | C2H4g28780 | CX4g031427 | LOC_Os04g52830 | Os04g0619300 | Ctb1 | Detail |
| C1H4g13931 | 4:27,404,926-27,408,291 | - | C2H4g02197 | CX4g035196 | LOC_Os04g52840 | Os04g0619400 | OsRLCK160 | Detail |
| C1H4g15202 | 4:27,414,637-27,417,536 | + | C2H4g23444 | CX4g033062 | LOC_Os04g52850 | Os04g0619500 | - | Detail |
| C1H4g24641 | 4:27,419,171-27,421,705 | - | C2H4g18841 | CX4g033748 | LOC_Os04g52860 | Os04g0619600 | - | Detail |
| C1H4g04907 | 4:27,425,704-27,428,943 | - | C2H4g25907 | - | - | - | - | Detail |
| C1H4g18235 | 4:27,441,312-27,446,700 | + | C2H4g06612 | CX4g036286 | LOC_Os04g52890 | Os04g0619900 | - | Detail |
| C1H4g18046 | 4:27,447,425-27,459,871 | - | C2H4g03746 | CX4g032062 | LOC_Os04g52900 | Os04g0620000 | MRP1, OsABCC1, OsABCC1-1, OsABCC1-2, OsMRP1 | Detail |
| C1H4g10267 | 4:27,463,348-27,464,456 | - | - | - | - | - | - | Detail |
| C1H4g11396 | 4:27,467,836-27,470,683 | + | C2H4g02835 | CX4g031475 | LOC_Os04g52920 | Os04g0620200 | GSD1, OsREM6.6, REM6.6 | Detail |
| C1H4g16306 | 4:27,471,210-27,471,907 | - | - | - | LOC_Os04g52930 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g20650 | 4:415,787-419,023 | + | C1H4g06674 | CX4g034184 | LOC_Os04g01600 | Os04g0106400 | - | Detail |
| C2H4g07398 | 4:446,838-448,530 | - | C1H4g30135 | CX4g034282 | LOC_Os05g20980 | Os04g0610000 | - | Detail |
| C2H4g01591 | 4:451,369-452,919 | - | C1H4g17357 | CX4g035825 | LOC_Os04g01650 | Os04g0107200 | - | Detail |
| C2H4g03689 | 4:453,830-454,864 | + | C1H4g21850 | CX4g032580 | LOC_Os04g01660 | Os04g0107300 | - | Detail |
| C2H4g20828 | 4:456,071-456,750 | + | C1H4g02654 | CX4g035079 | LOC_Os04g01674 | Os04g0107500 | - | Detail |
| C2H4g21992 | 4:458,583-459,615 | + | C1H4g14105 | CX4g035079 | LOC_Os04g01674 | Os04g0107500 | - | Detail |
| C2H4g27739 | 4:469,807-471,678 | + | C1H4g31107 | CX4g033169 | LOC_Os04g01690 | Os04g0107600 | - | Detail |
| C2H4g09008 | 4:474,955-476,750 | - | C1H4g02232 | CX4g032108 | LOC_Os04g01710 | Os04g0107700 | - | Detail |
| C2H4g11206 | 4:492,237-494,584 | + | C1H4g06029 | CX4g032041 | LOC_Os04g01740 | Os04g0107900 | - | Detail |
| C2H4g04405 | 4:511,047-512,213 | + | C1H4g13706 | CX4g034450 | LOC_Os04g01890 | Os04g0109400 | - | Detail |
| C2H4g16500 | 4:532,739-535,387 | + | - | - | - | - | - | Detail |
| C2H4g30532 | 4:543,273-544,598 | + | C1H4g05385 | CX4g034916 | LOC_Os04g01810 | Os04g0108600 | - | Detail |
| C2H4g14496 | 4:551,152-552,985 | - | - | - | - | - | - | Detail |
| C2H4g12440 | 4:562,938-563,735 | - | C1H4g23997 | CX4g035974 | LOC_Os04g01874 | Os04g0109100 | - | Detail |
| C2H4g09873 | 4:569,151-570,602 | - | C1H4g11339 | CX4g035974 | LOC_Os04g01874 | Os04g0109100 | - | Detail |
| C2H4g07336 | 4:572,456-572,797 | - | - | - | - | - | - | Detail |
| C2H4g23517 | 4:579,003-580,991 | + | C1H4g13706 | CX4g034258 | LOC_Os04g01890 | Os04g0109400 | - | Detail |
| C2H4g26792 | 4:587,416-588,399 | - | C1H4g27926 | CX4g031379 | LOC_Os04g01910 | Os04g0109500 | - | Detail |
| C2H4g13820 | 4:598,197-598,799 | - | - | CX4g031657 | - | - | - | Detail |
| C2H4g23787 | 4:608,078-608,469 | + | C1H4g22895 | CX4g034880 | LOC_Os04g01930 | Os04g0109900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |