| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g19784 | 4:27,335,340-27,336,862 | - | C2H4g04663 | CX4g035396 | LOC_Os04g52720 | Os04g0617900 | - | Detail |
| C1H4g16144 | 4:27,341,358-27,345,597 | + | C2H4g20761 | CX4g036359 | - | - | - | Detail |
| C1H4g21738 | 4:27,347,008-27,350,734 | + | C2H4g14147 | CX4g032842 | LOC_Os04g52730 | Os04g0618200 | - | Detail |
| C1H4g28262 | 4:27,354,171-27,354,467 | + | C2H4g20866 | CX4g034575 | LOC_Os04g52750 | Os04g0618400 | - | Detail |
| C1H4g01403 | 4:27,355,456-27,359,541 | - | C2H4g09538 | CX4g035558 | LOC_Os04g52760 | Os04g0618500 | - | Detail |
| C1H4g16234 | 4:27,361,688-27,362,774 | + | C2H4g06850 | CX4g034460 | LOC_Os04g52770 | Os04g0618600 | PIF1 | Detail |
| C1H4g28199 | 4:27,363,964-27,368,068 | - | C2H4g10397 | CX4g034704 | LOC_Os04g52780 | Os04g0618700 | OsFLS2 | Detail |
| C1H4g22303 | 4:27,382,282-27,385,360 | - | C2H4g00816 | CX4g036144 | LOC_Os04g52810 | Os04g0619000 | ONAC083 | Detail |
| C1H4g07288 | 4:27,389,779-27,391,289 | + | - | - | LOC_Os04g52820 | - | - | Detail |
| C1H4g06933 | 4:27,391,734-27,392,098 | + | C2H4g08987 | CX4g032452 | - | - | - | Detail |
| C1H4g18636 | 4:27,400,694-27,403,858 | + | C2H4g28780 | CX4g031427 | LOC_Os04g52830 | Os04g0619300 | Ctb1 | Detail |
| C1H4g13931 | 4:27,404,926-27,408,291 | - | C2H4g02197 | CX4g035196 | LOC_Os04g52840 | Os04g0619400 | OsRLCK160 | Detail |
| C1H4g15202 | 4:27,414,637-27,417,536 | + | C2H4g23444 | CX4g033062 | LOC_Os04g52850 | Os04g0619500 | - | Detail |
| C1H4g24641 | 4:27,419,171-27,421,705 | - | C2H4g18841 | CX4g033748 | LOC_Os04g52860 | Os04g0619600 | - | Detail |
| C1H4g04907 | 4:27,425,704-27,428,943 | - | C2H4g25907 | - | - | - | - | Detail |
| C1H4g18235 | 4:27,441,312-27,446,700 | + | C2H4g06612 | CX4g036286 | LOC_Os04g52890 | Os04g0619900 | - | Detail |
| C1H4g18046 | 4:27,447,425-27,459,871 | - | C2H4g03746 | CX4g032062 | LOC_Os04g52900 | Os04g0620000 | MRP1, OsABCC1, OsABCC1-1, OsABCC1-2, OsMRP1 | Detail |
| C1H4g10267 | 4:27,463,348-27,464,456 | - | - | - | - | - | - | Detail |
| C1H4g11396 | 4:27,467,836-27,470,683 | + | C2H4g02835 | CX4g031475 | LOC_Os04g52920 | Os04g0620200 | GSD1, OsREM6.6, REM6.6 | Detail |
| C1H4g16306 | 4:27,471,210-27,471,907 | - | - | - | LOC_Os04g52930 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g17893 | 5:21,060,951-21,061,292 | + | C1H5g05296 | CX5g039378 | - | Os05g0429100 | - | Detail |
| C2H5g24181 | 5:21,062,627-21,066,664 | + | - | - | - | - | - | Detail |
| C2H5g19560 | 5:21,068,708-21,071,240 | + | - | - | - | - | - | Detail |
| C2H5g13301 | 5:21,071,486-21,074,500 | + | C1H5g04787 | CX5g036865 | LOC_Os05g43230 | Os05g0508300 | - | Detail |
| C2H5g18645 | 5:21,076,267-21,080,711 | + | C1H5g17723 | CX5g036817 | LOC_Os05g43240 | Os05g0508400 | - | Detail |
| C2H5g18041 | 5:21,082,727-21,084,311 | + | C1H5g24403 | CX5g039246 | - | Os05g0169000 | - | Detail |
| C2H5g09062 | 5:21,085,304-21,087,442 | + | C1H5g06065 | CX5g040481 | LOC_Os05g43252 | Os05g0508500 | OsTrxh2 | Detail |
| C2H5g04532 | 5:21,089,463-21,090,919 | + | C1H6g21336 | CX5g036989 | LOC_Os10g30951 | Os01g0391500 | - | Detail |
| C2H5g07781 | 5:21,094,303-21,095,514 | + | - | - | - | - | - | Detail |
| C2H5g27308 | 5:21,098,413-21,100,529 | + | - | CX5g040869 | - | - | - | Detail |
| C2H5g17689 | 5:21,106,393-21,117,781 | + | C1H5g01563 | CX5g038536 | LOC_Os05g43280 | Os05g0508700 | - | Detail |
| C2H5g12299 | 5:21,119,768-21,126,010 | + | C1H5g09451 | CX5g041072 | LOC_Os05g43300 | Os05g0508800 | - | Detail |
| C2H5g28018 | 5:21,126,647-21,127,268 | + | C1H5g08280 | CX5g039371 | LOC_Os05g43310 | Os05g0508900 | - | Detail |
| C2H5g05240 | 5:21,129,549-21,132,471 | + | C1H5g11413 | CX5g037153 | LOC_Os05g43360 | Os05g0509200 | - | Detail |
| C2H5g08227 | 5:21,133,498-21,139,398 | + | C1H5g23290 | CX5g039836 | LOC_Os05g43374 | Os05g0509300 | - | Detail |
| C2H5g21027 | 5:21,139,870-21,140,355 | - | C1H5g18210 | CX5g038317 | - | Os05g0509400 | - | Detail |
| C2H5g09571 | 5:21,140,653-21,142,085 | - | C1H5g08200 | CX5g038317 | LOC_Os05g43380 | Os05g0509400 | - | Detail |
| C2H5g23315 | 5:21,146,168-21,149,085 | - | C1H5g09672 | CX5g039296 | LOC_Os05g43390 | Os05g0509500 | - | Detail |
| C2H5g08602 | 5:21,151,638-21,155,121 | + | C1H5g24566 | CX5g041045 | LOC_Os05g44410 | Os05g0509800 | - | Detail |
| C2H5g17414 | 5:21,156,210-21,157,990 | - | C1H5g06721 | CX5g041066 | LOC_Os05g43440 | Os05g0509700 | OsmtSSB1, TA1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |