| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g25868 | 4:27,028,064-27,031,267 | + | C2H4g14538 | CX4g032554 | LOC_Os04g52320 | Os04g0613200 | - | Detail |
| C1H4g13224 | 4:27,033,552-27,036,319 | - | C2H4g16426 | CX4g033530 | LOC_Os04g52330 | Os04g0613300 | - | Detail |
| C1H4g01801 | 4:27,037,337-27,041,771 | - | C2H4g12813 | CX4g033988 | LOC_Os04g52340 | Os04g0613400 | - | Detail |
| C1H4g11906 | 4:27,042,573-27,044,494 | + | C2H4g02435 | CX4g031886 | LOC_Os04g52361 | Os04g0613500 | - | Detail |
| C1H4g23783 | 4:27,045,459-27,047,091 | + | C2H4g02435 | CX4g035778 | LOC_Os04g52361 | Os04g0613600 | - | Detail |
| C1H4g03528 | 4:27,048,147-27,052,611 | - | C2H4g14262 | CX4g033920 | LOC_Os04g52370 | Os04g0613700 | UAP2 | Detail |
| C1H4g12683 | 4:27,058,517-27,064,454 | - | C2H4g30596 | CX4g033615 | LOC_Os04g52380 | Os04g0613800 | - | Detail |
| C1H4g15444 | 4:27,067,771-27,072,901 | - | C2H4g10814 | CX4g032046 | LOC_Os04g52390 | Os04g0613900 | - | Detail |
| C1H4g09621 | 4:27,078,784-27,081,225 | + | C2H4g02940 | CX4g033364 | LOC_Os04g52400 | Os04g0614000 | - | Detail |
| C1H4g18002 | 4:27,082,871-27,084,273 | + | C2H4g14823 | CX4g033138 | LOC_Os04g52410 | Os04g0614100 | - | Detail |
| C1H4g00068 | 4:27,086,714-27,090,608 | + | C2H4g28997 | CX4g031526 | LOC_Os04g52420 | Os04g0616900 | - | Detail |
| C1H4g05036 | 4:27,094,625-27,096,302 | + | C2H4g06699 | CX4g031526 | LOC_Os04g52660 | Os04g0614300 | - | Detail |
| C1H4g02712 | 4:27,100,763-27,106,548 | + | C2H4g17218 | CX4g035904 | LOC_Os04g52450 | Os04g0614600 | - | Detail |
| C1H4g17515 | 4:27,111,400-27,120,369 | + | C2H4g10708 | CX4g035957 | LOC_Os04g52460 | Os04g0614700 | - | Detail |
| C1H4g07167 | 4:27,132,062-27,132,244 | + | - | - | - | - | - | Detail |
| C1H4g20369 | 4:27,132,485-27,137,405 | + | C2H4g23243 | CX4g036351 | LOC_Os04g52479 | Os04g0615000 | NAL1, nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4 | Detail |
| C1H4g29702 | 4:27,138,169-27,142,624 | + | C2H4g24013 | CX4g034949 | LOC_Os04g52500 | Os04g0615100 | - | Detail |
| C1H4g06180 | 4:27,143,216-27,143,900 | - | C2H4g04550 | - | LOC_Os04g52504 | Os04g0615200 | - | Detail |
| C1H4g16195 | 4:27,146,332-27,149,911 | + | C2H4g11553 | CX4g031653 | LOC_Os04g52520 | Os04g0615500 | - | Detail |
| C1H4g22078 | 4:27,150,667-27,151,792 | + | C2H4g12331 | CX4g031949 | LOC_Os04g52530 | Os04g0615600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g07378 | 1:34,453,638-34,455,892 | + | C1H1g17352 | CX1g002421 | LOC_Os01g67170 | Os01g0897100 | - | Detail |
| C2H1g16084 | 1:34,456,887-34,459,759 | - | C1H1g14594 | CX1g007222 | LOC_Os01g67180 | Os01g0897200 | - | Detail |
| C2H1g21261 | 1:34,460,481-34,463,439 | - | C1H1g18893 | CX1g007222 | LOC_Os01g67190 | Os01g0897300 | - | Detail |
| C2H1g08138 | 1:34,472,390-34,477,396 | + | C1H1g13480 | CX1g005094 | LOC_Os01g67220 | Os01g0897600 | Os1βGlu4 | Detail |
| C2H1g29857 | 1:34,478,866-34,479,075 | + | C1H1g21764 | - | - | Os08g0170400 | - | Detail |
| C2H1g28742 | 1:34,482,265-34,486,398 | - | C1H1g31716 | CX1g001233 | LOC_Os01g67240 | Os01g0897700 | OsFH1 | Detail |
| C2H1g17165 | 1:34,494,460-34,504,501 | - | C1H1g23647 | CX1g000742 | LOC_Os01g67250 | Os01g0897800 | - | Detail |
| C2H1g15809 | 1:34,510,496-34,511,380 | + | C1H4g20867 | CX1g002092 | LOC_Os12g34470 | Os01g0198900 | - | Detail |
| C2H1g12889 | 1:34,530,965-34,537,663 | - | C1H1g27730 | CX1g005478 | LOC_Os01g67290 | Os01g0898300 | - | Detail |
| C2H1g09014 | 1:34,542,385-34,544,496 | + | C1H1g09687 | CX1g002008 | LOC_Os01g67300 | Os01g0898400 | - | Detail |
| C2H1g04830 | 1:34,544,865-34,547,006 | + | C1H1g23893 | CX1g006649 | LOC_Os01g67310 | Os01g0898500 | - | Detail |
| C2H1g01136 | 1:34,549,618-34,551,954 | - | C1H1g03088 | CX1g000739 | LOC_Os01g67314 | Os01g0898600 | - | Detail |
| C2H1g30021 | 1:34,558,306-34,560,031 | + | C1H1g20281 | CX1g001366 | - | Os01g0898800 | - | Detail |
| C2H1g25365 | 1:34,563,759-34,568,620 | + | C1H1g13611 | CX1g002818 | LOC_Os01g67330 | Os01g0898900 | - | Detail |
| C2H1g14239 | 1:34,570,481-34,572,648 | - | C1H1g22738 | CX1g005754 | LOC_Os01g67340 | Os01g0899000 | - | Detail |
| C2H1g12354 | 1:34,586,748-34,589,757 | - | C1H1g16761 | CX1g003678 | LOC_Os01g67360 | Os01g0899200 | - | Detail |
| C2H1g12009 | 1:34,594,532-34,599,845 | - | C1H1g13163 | CX1g003648 | LOC_Os01g67370 | Os01g0899500 | - | Detail |
| C2H1g06986 | 1:34,602,702-34,604,341 | - | C1H1g18275 | CX1g003014 | LOC_Os01g67390 | Os01g0899700 | COG2 | Detail |
| C2H1g13678 | 1:34,606,600-34,610,224 | - | C1H1g21259 | CX1g005480 | LOC_Os01g67410 | Os01g0899800 | - | Detail |
| C2H1g15739 | 1:34,620,158-34,626,878 | + | C1H1g15270 | CX1g001856 | LOC_Os01g67420 | Os01g0900200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |