| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07457 | 4:26,697,397-26,699,943 | - | C2H4g24514 | CX4g032647 | LOC_Os04g51820 | Os04g0607500 | - | Detail |
| C1H4g09049 | 4:26,699,977-26,701,273 | + | - | - | LOC_Os04g57570 | Os04g0607566 | - | Detail |
| C1H4g03737 | 4:26,706,967-26,711,188 | - | C2H4g20946 | CX4g032647 | LOC_Os04g51830 | Os04g0607600 | HKT7, OsHKT7, OsHKT1;4 | Detail |
| C1H4g18775 | 4:26,721,115-26,727,250 | - | C2H4g25434 | CX4g036606 | LOC_Os04g51880 | Os04g0608100 | - | Detail |
| C1H4g12772 | 4:26,764,607-26,770,634 | + | C2H4g29904 | CX4g035281 | LOC_Os04g51900 | Os04g0608400 | - | Detail |
| C1H4g08259 | 4:26,771,092-26,776,958 | - | C2H4g09751 | CX4g034715 | LOC_Os04g51910 | Os04g0608500 | OsRpn2b | Detail |
| C1H4g09401 | 4:26,778,363-26,780,432 | - | C2H4g13061 | CX4g034786 | LOC_Os04g51920 | Os04g0608600 | - | Detail |
| C1H4g08184 | 4:26,786,584-26,791,005 | + | C2H4g04998 | CX4g035213 | LOC_Os04g51940 | Os04g0608800 | - | Detail |
| C1H4g21318 | 4:26,791,108-26,795,235 | - | C2H4g22085 | CX4g033381 | LOC_Os04g51950 | Os04g0608900 | OsDPK4 | Detail |
| C1H4g09678 | 4:26,796,880-26,800,043 | + | C2H4g09513 | CX4g033039 | LOC_Os04g51960 | Os04g0609100 | - | Detail |
| C1H4g11239 | 4:26,805,239-26,808,986 | - | C2H4g22846 | CX4g036027 | LOC_Os04g51970 | Os04g0609200 | - | Detail |
| C1H4g04504 | 4:26,812,603-26,814,463 | + | C2H4g10194 | CX4g036172 | LOC_Os04g51980 | Os04g0609300 | - | Detail |
| C1H4g23593 | 4:26,820,808-26,822,862 | + | C2H4g14068 | CX4g032055 | LOC_Os04g51990 | Os04g0609500 | - | Detail |
| C1H4g02872 | 4:26,826,604-26,830,102 | - | C2H4g14049 | CX4g033415 | LOC_Os04g52000 | Os04g0609600 | - | Detail |
| C1H4g17909 | 4:26,836,880-26,852,312 | - | C2H4g12333 | CX4g035873 | LOC_Os04g52020 | Os04g0609700 | - | Detail |
| C1H4g16882 | 4:26,853,141-26,858,341 | - | C2H4g29505 | CX4g033944 | LOC_Os04g52040 | Os04g0609900 | - | Detail |
| C1H4g30135 | 4:26,858,701-26,863,480 | - | C2H4g09466 | CX4g033944 | LOC_Os04g52050 | Os04g0610000 | - | Detail |
| C1H4g03039 | 4:26,864,492-26,869,481 | - | C2H4g24559 | CX4g036281 | LOC_Os04g52060 | Os04g0610100 | - | Detail |
| C1H4g26012 | 4:26,871,319-26,877,771 | + | C2H4g13843 | CX4g036281 | LOC_Os04g52074 | Os04g0610200 | - | Detail |
| C1H4g22248 | 4:26,888,385-26,892,033 | - | C2H4g06680 | CX4g031762 | LOC_Os04g52100 | Os04g0610500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g22765 | 2:28,236,918-28,237,175 | - | C1H2g07594 | CX2g023200 | - | Os02g0736700 | - | Detail |
| C2H2g11611 | 2:28,240,281-28,240,817 | - | - | CX2g022254 | - | Os02g0736900 | - | Detail |
| C2H2g25731 | 2:28,245,225-28,245,455 | + | - | - | LOC_Os02g50400 | Os02g0737300 | - | Detail |
| C2H2g21919 | 2:28,251,181-28,251,420 | + | C1H2g14249 | - | LOC_Os02g50450 | Os02g0738100 | - | Detail |
| C2H2g10969 | 2:28,257,712-28,259,079 | - | C1H2g14103 | CX2g023707 | LOC_Os02g50460 | Os02g0738200 | - | Detail |
| C2H2g16308 | 2:28,277,648-28,283,562 | + | C1H2g00500 | CX2g021204 | LOC_Os02g50480 | Os02g0738400 | OHK5, OHK5, Ohk5, OsHK1, OsHK6, HK, Crl1a | Detail |
| C2H2g12754 | 2:28,294,300-28,298,676 | + | C1H2g09387 | CX2g020936 | LOC_Os02g50490 | Os02g0738600 | - | Detail |
| C2H2g25440 | 2:28,300,139-28,310,024 | - | C1H2g28406 | CX2g022539 | LOC_Os02g50550 | Os02g0738900 | BC3, bc3, bc-3, OsDRP2B, DRP2B | Detail |
| C2H2g10338 | 2:28,311,660-28,320,928 | + | C1H2g06055 | CX2g024755 | LOC_Os02g50560 | Os02g0739000 | - | Detail |
| C2H2g19070 | 2:28,320,855-28,325,288 | - | C1H2g22155 | CX2g024527 | LOC_Os02g50570 | Os02g0739100 | - | Detail |
| C2H2g12798 | 2:28,334,593-28,335,726 | - | C1H2g26267 | CX2g023617 | LOC_Os02g50600 | Os02g0739400 | - | Detail |
| C2H2g13279 | 2:28,345,355-28,349,094 | - | C1H2g19740 | CX2g023255 | LOC_Os02g50620 | Os02g0739600 | - | Detail |
| C2H2g20599 | 2:28,350,795-28,353,624 | - | C1H2g02446 | CX2g021394 | LOC_Os02g50630 | Os02g0739700 | OsE2Fe-1 | Detail |
| C2H2g22496 | 2:28,356,473-28,360,636 | - | C1H2g01602 | CX2g023514 | LOC_Os02g50640 | Os02g0739900 | - | Detail |
| C2H2g07910 | 2:28,375,801-28,381,895 | - | C1H2g14498 | CX2g021304 | LOC_Os02g50680 | Os02g0740300 | - | Detail |
| C2H2g25866 | 2:28,382,669-28,384,104 | - | C1H2g26149 | CX2g024066 | LOC_Os02g50690 | Os02g0740400 | - | Detail |
| C2H2g26692 | 2:28,387,924-28,388,874 | + | C1H2g27425 | CX2g023069 | LOC_Os02g50700 | Os02g0740500 | - | Detail |
| C2H2g23006 | 2:28,390,599-28,390,880 | - | C1H2g04140 | CX2g024544 | LOC_Os02g50710 | Os02g0740600 | - | Detail |
| C2H2g13251 | 2:28,392,972-28,393,480 | + | - | - | - | - | - | Detail |
| C2H2g10045 | 2:28,393,015-28,394,133 | - | - | CX2g019920 | LOC_Os02g50730 | Os02g0740700 | OsMMP1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |