| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02875 | 4:26,302,924-26,308,851 | - | C2H4g27441 | CX4g033004 | LOC_Os04g51060 | Os02g0700000 | - | Detail |
| C1H4g14973 | 4:26,312,350-26,314,658 | - | C2H4g22306 | CX4g034139 | LOC_Os04g51070 | Os04g0599300 | EAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD | Detail |
| C1H4g26976 | 4:26,320,393-26,326,056 | + | C2H4g03863 | CX4g034652 | LOC_Os04g51080 | Os04g0599400 | - | Detail |
| C1H4g19631 | 4:26,329,325-26,343,393 | + | C2H4g03311 | CX4g033723 | LOC_Os04g51090 | Os04g0599650 | - | Detail |
| C1H4g29659 | 4:26,344,218-26,347,164 | + | C2H4g27597 | CX4g035416 | LOC_Os04g51100 | Os04g0599700 | - | Detail |
| C1H4g20555 | 4:26,347,861-26,350,745 | + | C2H4g20047 | CX4g033831 | LOC_Os04g51110 | Os04g0599800 | CDC20.1 | Detail |
| C1H4g01630 | 4:26,351,212-26,356,239 | + | C2H4g05473 | CX4g035744 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| C1H4g04836 | 4:26,358,923-26,360,679 | + | C2H4g10442 | CX4g035030 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| C1H4g15893 | 4:26,361,500-26,362,604 | - | C2H4g25284 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C1H4g02523 | 4:26,362,851-26,365,153 | - | C2H4g12319 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C1H4g17466 | 4:26,365,907-26,367,375 | - | C2H4g13155 | - | - | - | - | Detail |
| C1H4g06092 | 4:26,367,600-26,368,805 | - | C2H4g13155 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C1H4g28733 | 4:26,370,683-26,372,967 | - | C2H4g11382 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C1H4g27697 | 4:26,373,814-26,374,512 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g04973 | 4:26,374,598-26,379,006 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g07853 | 4:26,386,694-26,391,407 | - | C2H4g00138 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C1H4g08504 | 4:26,392,836-26,396,991 | - | C2H4g09942 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C1H4g18677 | 4:26,408,952-26,410,318 | - | C2H4g25560 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C1H4g11359 | 4:26,411,776-26,413,423 | - | C2H4g10254 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C1H4g04413 | 4:26,413,308-26,414,261 | + | C2H4g14874 | CX4g034624 | LOC_Os04g51290 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08716 | 3:16,925,345-16,925,834 | + | C1H3g16844 | - | LOC_Os03g32330 | Os03g0438400 | - | Detail |
| C2H3g25901 | 3:16,975,364-16,976,902 | + | C1H3g27126 | CX3g028421 | LOC_Os03g32470 | Os03g0439500 | - | Detail |
| C2H3g00828 | 3:16,982,325-16,983,125 | - | C1H3g10649 | CX3g029614 | - | Os03g0114400 | - | Detail |
| C2H3g13437 | 3:17,025,684-17,027,541 | - | C1H3g06834 | CX3g025406 | LOC_Os03g32490 | Os03g0439700 | - | Detail |
| C2H3g15363 | 3:17,032,739-17,034,277 | + | C1H3g21761 | CX3g028175 | LOC_Os03g32499 | Os03g0439800 | - | Detail |
| C2H3g25565 | 3:17,052,831-17,055,209 | + | C1H3g11595 | CX3g026641 | LOC_Os03g32580 | Os03g0440900 | - | Detail |
| C2H3g20190 | 3:17,055,536-17,064,832 | - | C1H3g28711 | CX3g027696 | LOC_Os03g32590 | Os03g0441000 | - | Detail |
| C2H3g11825 | 3:17,074,561-17,077,071 | - | C1H3g12283 | CX3g025857 | LOC_Os03g32620 | Os03g0441400 | - | Detail |
| C2H3g07036 | 3:17,168,713-17,169,390 | + | C1H3g09033 | CX3g025420 | LOC_Os03g32790 | Os03g0442900 | - | Detail |
| C2H3g18530 | 3:17,316,196-17,316,901 | - | C1H3g08585 | CX3g029665 | LOC_Os03g33090 | Os03g0445700 | OsLBD37 | Detail |
| C2H3g30048 | 3:17,359,090-17,362,124 | + | C1H3g15486 | CX3g024950 | - | - | - | Detail |
| C2H3g30096 | 3:17,427,330-17,434,816 | - | C1H3g26264 | CX3g029845 | LOC_Os03g33580 | Os03g0448600 | - | Detail |
| C2H3g02896 | 3:17,446,012-17,452,485 | - | C1H3g27459 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C2H3g09597 | 3:17,504,409-17,508,494 | + | C1H3g11876 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C2H3g06387 | 3:17,573,773-17,577,321 | - | C1H3g10349 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g24450 | 3:17,583,817-17,584,173 | - | C1H3g26549 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g04259 | 3:17,695,517-17,699,643 | - | C1H3g16808 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C2H3g26683 | 3:17,735,716-17,736,909 | + | - | CX3g027872 | - | Os03g0454300 | - | Detail |
| C2H3g20904 | 3:17,751,779-17,752,998 | + | C1H3g08800 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C2H3g06895 | 3:17,755,871-17,758,744 | + | C1H3g13672 | CX3g026131 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |