| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02875 | 4:26,302,924-26,308,851 | - | C2H4g27441 | CX4g033004 | LOC_Os04g51060 | Os02g0700000 | - | Detail |
| C1H4g14973 | 4:26,312,350-26,314,658 | - | C2H4g22306 | CX4g034139 | LOC_Os04g51070 | Os04g0599300 | EAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD | Detail |
| C1H4g26976 | 4:26,320,393-26,326,056 | + | C2H4g03863 | CX4g034652 | LOC_Os04g51080 | Os04g0599400 | - | Detail |
| C1H4g19631 | 4:26,329,325-26,343,393 | + | C2H4g03311 | CX4g033723 | LOC_Os04g51090 | Os04g0599650 | - | Detail |
| C1H4g29659 | 4:26,344,218-26,347,164 | + | C2H4g27597 | CX4g035416 | LOC_Os04g51100 | Os04g0599700 | - | Detail |
| C1H4g20555 | 4:26,347,861-26,350,745 | + | C2H4g20047 | CX4g033831 | LOC_Os04g51110 | Os04g0599800 | CDC20.1 | Detail |
| C1H4g01630 | 4:26,351,212-26,356,239 | + | C2H4g05473 | CX4g035744 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| C1H4g04836 | 4:26,358,923-26,360,679 | + | C2H4g10442 | CX4g035030 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| C1H4g15893 | 4:26,361,500-26,362,604 | - | C2H4g25284 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C1H4g02523 | 4:26,362,851-26,365,153 | - | C2H4g12319 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C1H4g17466 | 4:26,365,907-26,367,375 | - | C2H4g13155 | - | - | - | - | Detail |
| C1H4g06092 | 4:26,367,600-26,368,805 | - | C2H4g13155 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C1H4g28733 | 4:26,370,683-26,372,967 | - | C2H4g11382 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C1H4g27697 | 4:26,373,814-26,374,512 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g04973 | 4:26,374,598-26,379,006 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g07853 | 4:26,386,694-26,391,407 | - | C2H4g00138 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C1H4g08504 | 4:26,392,836-26,396,991 | - | C2H4g09942 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C1H4g18677 | 4:26,408,952-26,410,318 | - | C2H4g25560 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C1H4g11359 | 4:26,411,776-26,413,423 | - | C2H4g10254 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C1H4g04413 | 4:26,413,308-26,414,261 | + | C2H4g14874 | CX4g034624 | LOC_Os04g51290 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g18922 | 8:7,299,656-7,299,955 | - | C1H1g04932 | - | LOC_Os05g11320 | Os01g0200700 | OsMT-3a | Detail |
| C2H8g05873 | 8:7,306,644-7,307,211 | - | C1H8g03609 | - | LOC_Os08g15170 | Os08g0250200 | - | Detail |
| C2H8g06800 | 8:7,318,482-7,326,790 | + | C1H8g04801 | CX8g054347 | LOC_Os08g15204 | Os08g0250700 | - | Detail |
| C2H8g24391 | 8:7,351,623-7,355,348 | - | C1H8g23794 | CX8g053865 | LOC_Os08g15230 | Os08g0250900 | OsSMAX1, SMAX1 | Detail |
| C2H8g02057 | 8:7,395,084-7,397,189 | + | - | CX8g052684 | - | Os08g0471300 | - | Detail |
| C2H8g25132 | 8:7,423,171-7,427,148 | + | C1H8g13609 | CX8g051517 | LOC_Os08g15420 | Os08g0253800 | OsCSLC3 | Detail |
| C2H8g28471 | 8:7,437,897-7,438,302 | + | - | CX8g053849 | LOC_Os08g15444 | Os08g0254200 | - | Detail |
| C2H8g10901 | 8:7,441,457-7,444,144 | + | C1H8g28249 | CX8g054043 | LOC_Os08g15450 | Os08g0254300 | - | Detail |
| C2H8g15756 | 8:7,447,662-7,453,317 | + | C1H8g17504 | CX8g050710 | LOC_Os08g15460 | Os08g0254500 | - | Detail |
| C2H8g04316 | 8:7,453,659-7,456,454 | - | - | CX8g051826 | - | Os08g0254600 | - | Detail |
| C2H8g20154 | 8:7,466,757-7,470,058 | + | C1H8g00139 | CX8g053973 | LOC_Os08g15500 | Os08g0254900 | - | Detail |
| C2H8g30474 | 8:7,472,768-7,473,234 | - | C1H8g27217 | - | LOC_Os08g15505 | - | - | Detail |
| C2H8g17591 | 8:7,513,619-7,513,861 | - | C1H8g15025 | CX8g051513 | - | - | - | Detail |
| C2H8g12595 | 8:7,613,563-7,618,251 | - | C1H8g31341 | CX8g052496 | LOC_Os08g15840 | Os08g0258200 | - | Detail |
| C2H8g16833 | 8:7,658,903-7,661,928 | + | C1H8g13662 | CX8g054282 | LOC_Os08g16010 | Os08g0260000 | - | Detail |
| C2H8g13952 | 8:7,684,841-7,687,228 | - | C1H8g20697 | CX8g050529 | LOC_Os08g16050 | Os08g0260600 | OsTET11 | Detail |
| C2H8g17806 | 8:7,696,965-7,699,751 | - | C1H8g29041 | CX8g054334 | LOC_Os08g16460 | Os08g0260800 | - | Detail |
| C2H8g30167 | 8:7,728,493-7,731,261 | + | C1H8g29041 | CX8g052721 | LOC_Os08g16460 | Os08g0261000 | - | Detail |
| C2H8g15835 | 8:7,733,820-7,736,399 | - | C1H8g18297 | CX8g054602 | LOC_Os08g16130 | Os08g0261100 | - | Detail |
| C2H8g17417 | 8:7,768,863-7,770,053 | + | C1H8g17521 | CX8g051363 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |