| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02875 | 4:26,302,924-26,308,851 | - | C2H4g27441 | CX4g033004 | LOC_Os04g51060 | Os02g0700000 | - | Detail |
| C1H4g14973 | 4:26,312,350-26,314,658 | - | C2H4g22306 | CX4g034139 | LOC_Os04g51070 | Os04g0599300 | EAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD | Detail |
| C1H4g26976 | 4:26,320,393-26,326,056 | + | C2H4g03863 | CX4g034652 | LOC_Os04g51080 | Os04g0599400 | - | Detail |
| C1H4g19631 | 4:26,329,325-26,343,393 | + | C2H4g03311 | CX4g033723 | LOC_Os04g51090 | Os04g0599650 | - | Detail |
| C1H4g29659 | 4:26,344,218-26,347,164 | + | C2H4g27597 | CX4g035416 | LOC_Os04g51100 | Os04g0599700 | - | Detail |
| C1H4g20555 | 4:26,347,861-26,350,745 | + | C2H4g20047 | CX4g033831 | LOC_Os04g51110 | Os04g0599800 | CDC20.1 | Detail |
| C1H4g01630 | 4:26,351,212-26,356,239 | + | C2H4g05473 | CX4g035744 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| C1H4g04836 | 4:26,358,923-26,360,679 | + | C2H4g10442 | CX4g035030 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| C1H4g15893 | 4:26,361,500-26,362,604 | - | C2H4g25284 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C1H4g02523 | 4:26,362,851-26,365,153 | - | C2H4g12319 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C1H4g17466 | 4:26,365,907-26,367,375 | - | C2H4g13155 | - | - | - | - | Detail |
| C1H4g06092 | 4:26,367,600-26,368,805 | - | C2H4g13155 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C1H4g28733 | 4:26,370,683-26,372,967 | - | C2H4g11382 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C1H4g27697 | 4:26,373,814-26,374,512 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g04973 | 4:26,374,598-26,379,006 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g07853 | 4:26,386,694-26,391,407 | - | C2H4g00138 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C1H4g08504 | 4:26,392,836-26,396,991 | - | C2H4g09942 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C1H4g18677 | 4:26,408,952-26,410,318 | - | C2H4g25560 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C1H4g11359 | 4:26,411,776-26,413,423 | - | C2H4g10254 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C1H4g04413 | 4:26,413,308-26,414,261 | + | C2H4g14874 | CX4g034624 | LOC_Os04g51290 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g06182 | 7:20,459,244-20,462,529 | + | C1H7g03509 | CX7g050268 | LOC_Os07g41694 | Os07g0607800 | - | Detail |
| C2H7g20380 | 7:20,465,552-20,467,290 | + | C1H7g10145 | CX7g048714 | - | - | - | Detail |
| C2H7g07775 | 7:20,468,872-20,471,204 | + | C1H7g08628 | CX7g048960 | LOC_Os07g41710 | Os07g0608100 | - | Detail |
| C2H7g06133 | 7:20,471,553-20,476,070 | - | C1H7g26187 | CX7g048103 | LOC_Os07g41720 | Os07g0608200 | OsNF-YA6, HAP2G | Detail |
| C2H7g06353 | 7:20,482,890-20,488,095 | + | C1H7g09112 | CX7g047265 | LOC_Os07g41730 | Os07g0608300 | - | Detail |
| C2H7g30265 | 7:20,489,084-20,493,536 | + | C1H7g30877 | CX7g049344 | LOC_Os07g41740 | Os07g0608400 | - | Detail |
| C2H7g16246 | 7:20,495,401-20,497,492 | - | C1H7g11823 | CX7g047956 | LOC_Os07g41750 | Os07g0608500 | - | Detail |
| C2H7g19110 | 7:20,499,334-20,501,211 | - | C1H7g31561 | CX3g029764 | LOC_Os07g41790 | Os07g0608700 | - | Detail |
| C2H7g19102 | 7:20,501,471-20,505,854 | + | C1H7g06229 | CX7g046442 | LOC_Os07g41800 | Os07g0608800 | - | Detail |
| C2H7g26217 | 7:20,507,370-20,508,173 | + | C1H7g11766 | CX7g046671 | LOC_Os07g41810 | Os07g0609000 | - | Detail |
| C2H7g01493 | 7:20,508,282-20,509,835 | + | C1H7g05487 | CX7g046442 | LOC_Os07g41800 | Os07g0608800 | - | Detail |
| C2H7g09862 | 7:20,511,440-20,512,225 | + | C1H7g05016 | CX7g046759 | LOC_Os07g41810 | Os07g0609000 | - | Detail |
| C2H7g04167 | 7:20,514,485-20,518,716 | + | C1H7g08710 | CX7g047589 | LOC_Os07g41930 | Os07g0609100 | - | Detail |
| C2H7g28292 | 7:20,521,671-20,522,718 | - | C1H7g04031 | - | LOC_Os07g41840 | Os07g0609550 | - | Detail |
| C2H7g20809 | 7:20,553,429-20,554,406 | + | C1H7g21587 | - | LOC_Os07g41900 | Os07g0609766 | OsLFR | Detail |
| C2H7g23534 | 7:20,554,838-20,557,561 | + | C1H7g21587 | - | LOC_Os07g41900 | Os07g0609766 | OsLFR | Detail |
| C2H7g08435 | 7:20,581,519-20,581,890 | + | C1H7g08710 | CX7g047589 | LOC_Os07g42070 | Os07g0611500 | - | Detail |
| C2H7g00036 | 7:20,581,919-20,582,188 | + | C1H7g01381 | - | LOC_Os07g42070 | Os07g0611500 | - | Detail |
| C2H7g23711 | 7:20,596,533-20,599,583 | - | C1H7g02856 | CX7g046191 | LOC_Os07g42000 | - | - | Detail |
| C2H7g11091 | 7:20,614,467-20,615,539 | + | C1H7g26201 | CX7g047589 | LOC_Os07g42030 | Os07g0611200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |