| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23154 | 4:25,375,879-25,376,383 | + | C2H4g16720 | CX4g035222 | LOC_Os04g48870 | Os04g0578300 | - | Detail |
| C1H4g05799 | 4:25,380,434-25,382,490 | + | C2H4g19270 | CX4g033101 | LOC_Os04g48880 | Os04g0578400 | - | Detail |
| C1H4g10126 | 4:25,385,788-25,387,233 | + | C2H4g07940 | CX4g036080 | - | Os04g0578550 | - | Detail |
| C1H4g19909 | 4:25,389,934-25,392,744 | - | C2H4g30133 | CX4g031675 | LOC_Os04g48930 | Os04g0578600 | OsFRO2, OsFRO1 | Detail |
| C1H4g18610 | 4:25,395,649-25,402,145 | + | C2H4g19460 | CX4g031656 | LOC_Os04g48940 | Os04g0578700 | - | Detail |
| C1H4g06167 | 4:25,403,323-25,405,698 | - | C2H4g08137 | CX4g031706 | LOC_Os04g48950 | Os04g0578800 | - | Detail |
| C1H4g02070 | 4:25,453,772-25,456,031 | + | C2H4g23542 | CX4g031363 | LOC_Os04g49060 | Os04g0579700 | - | Detail |
| C1H4g09996 | 4:25,478,430-25,481,611 | - | C2H4g28226 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C1H4g17233 | 4:25,493,735-25,494,082 | + | - | - | - | - | - | Detail |
| C1H4g28417 | 4:25,494,507-25,500,090 | + | C2H4g28180 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C1H4g25535 | 4:25,522,941-25,524,543 | - | - | CX12g016081 | LOC_Os12g18450 | - | - | Detail |
| C1H4g30271 | 4:25,528,884-25,529,605 | + | C2H4g16797 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g21644 | 4:25,533,632-25,535,003 | + | C2H4g02021 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g27247 | 4:25,536,556-25,537,960 | - | C2H4g17595 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C1H4g19809 | 4:25,548,364-25,551,428 | - | C2H4g22618 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C1H4g26375 | 4:25,602,473-25,602,983 | - | C2H4g27357 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C1H4g04071 | 4:25,605,130-25,609,018 | - | C2H4g21103 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C1H4g14184 | 4:25,610,403-25,615,940 | - | C2H4g08363 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C1H4g22667 | 4:25,617,263-25,622,773 | - | C2H4g18439 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C1H4g13543 | 4:25,624,250-25,626,330 | - | C2H4g27939 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g08610 | 1:13,810,471-13,815,866 | + | C1H1g21722 | CX1g007040 | LOC_Os01g27160 | Os01g0369200 | OsCUL1-3 | Detail |
| C2H1g00961 | 1:13,816,389-13,821,011 | - | C1H1g09984 | CX1g002985 | LOC_Os01g27170 | Os01g0369300 | OsHAK3 | Detail |
| C2H1g23105 | 1:13,824,371-13,825,390 | + | C1H1g21027 | CX1g004644 | LOC_Os01g27190 | Os01g0369500 | - | Detail |
| C2H1g15692 | 1:13,825,474-13,826,315 | + | C1H1g15878 | - | - | - | - | Detail |
| C2H1g16294 | 1:13,829,095-13,829,599 | + | C1H1g28118 | CX1g005028 | - | - | - | Detail |
| C2H1g16460 | 1:13,834,853-13,836,145 | - | C1H1g15388 | CX1g002058 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| C2H1g30124 | 1:13,848,128-13,855,233 | - | C1H1g06071 | CX1g000151 | LOC_Os01g27230 | Os01g0369900 | - | Detail |
| C2H1g01507 | 1:13,883,190-13,884,613 | - | C1H1g03681 | CX1g005680 | LOC_Os01g27240 | Os01g0370000 | - | Detail |
| C2H1g22665 | 1:13,889,659-13,890,761 | - | C1H1g30782 | CX1g001786 | LOC_Os01g27260 | Os01g0370200 | - | Detail |
| C2H1g21352 | 1:13,895,439-13,896,255 | + | C1H1g22563 | CX1g004528 | LOC_Os01g27300 | Os01g0370600 | - | Detail |
| C2H1g26657 | 1:13,918,791-13,920,178 | - | C1H1g11191 | CX1g000438 | LOC_Os01g27340 | Os01g0371200 | - | Detail |
| C2H1g23519 | 1:13,944,433-13,946,386 | - | C1H1g11191 | CX1g000438 | LOC_Os01g27360 | Os01g0371200 | - | Detail |
| C2H1g16372 | 1:13,954,176-13,956,281 | + | C1H1g01633 | CX1g000761 | LOC_Os01g27380 | Os01g0371400 | - | Detail |
| C2H1g14709 | 1:13,956,947-13,959,760 | + | C1H1g01995 | CX1g000761 | LOC_Os01g27390 | Os01g0371500 | - | Detail |
| C2H1g17472 | 1:13,973,405-13,974,157 | + | C1H1g01504 | CX1g005217 | LOC_Os01g27470 | Os01g0918300 | - | Detail |
| C2H1g25553 | 1:13,974,176-13,974,463 | + | C1H1g01504 | CX1g005217 | LOC_Os01g27470 | Os01g0918300 | - | Detail |
| C2H1g29817 | 1:13,978,729-13,979,604 | + | C1H1g12705 | CX1g000438 | LOC_Os01g27480 | Os01g0372400 | - | Detail |
| C2H1g22981 | 1:13,987,387-13,991,283 | - | C1H1g03999 | CX1g002992 | LOC_Os01g27520 | Os01g0372700 | - | Detail |
| C2H1g25759 | 1:13,997,755-13,999,810 | - | C1H1g23536 | - | LOC_Os01g27570 | Os01g0373200 | - | Detail |
| C2H1g27806 | 1:14,003,189-14,003,766 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |