| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23154 | 4:25,375,879-25,376,383 | + | C2H4g16720 | CX4g035222 | LOC_Os04g48870 | Os04g0578300 | - | Detail |
| C1H4g05799 | 4:25,380,434-25,382,490 | + | C2H4g19270 | CX4g033101 | LOC_Os04g48880 | Os04g0578400 | - | Detail |
| C1H4g10126 | 4:25,385,788-25,387,233 | + | C2H4g07940 | CX4g036080 | - | Os04g0578550 | - | Detail |
| C1H4g19909 | 4:25,389,934-25,392,744 | - | C2H4g30133 | CX4g031675 | LOC_Os04g48930 | Os04g0578600 | OsFRO2, OsFRO1 | Detail |
| C1H4g18610 | 4:25,395,649-25,402,145 | + | C2H4g19460 | CX4g031656 | LOC_Os04g48940 | Os04g0578700 | - | Detail |
| C1H4g06167 | 4:25,403,323-25,405,698 | - | C2H4g08137 | CX4g031706 | LOC_Os04g48950 | Os04g0578800 | - | Detail |
| C1H4g02070 | 4:25,453,772-25,456,031 | + | C2H4g23542 | CX4g031363 | LOC_Os04g49060 | Os04g0579700 | - | Detail |
| C1H4g09996 | 4:25,478,430-25,481,611 | - | C2H4g28226 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C1H4g17233 | 4:25,493,735-25,494,082 | + | - | - | - | - | - | Detail |
| C1H4g28417 | 4:25,494,507-25,500,090 | + | C2H4g28180 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C1H4g25535 | 4:25,522,941-25,524,543 | - | - | CX12g016081 | LOC_Os12g18450 | - | - | Detail |
| C1H4g30271 | 4:25,528,884-25,529,605 | + | C2H4g16797 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g21644 | 4:25,533,632-25,535,003 | + | C2H4g02021 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g27247 | 4:25,536,556-25,537,960 | - | C2H4g17595 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C1H4g19809 | 4:25,548,364-25,551,428 | - | C2H4g22618 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C1H4g26375 | 4:25,602,473-25,602,983 | - | C2H4g27357 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C1H4g04071 | 4:25,605,130-25,609,018 | - | C2H4g21103 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C1H4g14184 | 4:25,610,403-25,615,940 | - | C2H4g08363 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C1H4g22667 | 4:25,617,263-25,622,773 | - | C2H4g18439 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C1H4g13543 | 4:25,624,250-25,626,330 | - | C2H4g27939 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g24390 | 12:19,984,068-19,986,542 | - | C1H12g14974 | CX12g017948 | LOC_Os12g38950 | Os12g0578700 | - | Detail |
| C2H12g12388 | 12:19,989,565-19,991,606 | - | C1H12g15483 | CX12g015244 | - | Os12g0578800 | - | Detail |
| C2H12g19638 | 12:19,994,628-20,002,169 | + | C1H12g24155 | CX12g015548 | LOC_Os12g38970 | Os12g0579000 | - | Detail |
| C2H12g16465 | 12:20,011,089-20,012,024 | + | C1H12g27589 | CX12g018664 | LOC_Os12g38990 | - | - | Detail |
| C2H12g28724 | 12:20,045,600-20,050,098 | + | C1H12g03006 | CX12g016764 | LOC_Os12g39070 | Os12g0580300 | - | Detail |
| C2H12g30550 | 12:20,051,988-20,053,475 | + | C1H12g30686 | CX12g017525 | LOC_Os12g39080 | Os12g0580400 | OsPUT2 | Detail |
| C2H12g29593 | 12:20,053,493-20,054,925 | - | - | - | - | - | - | Detail |
| C2H12g19451 | 12:20,058,732-20,060,715 | + | C1H12g30608 | CX12g016465 | LOC_Os12g39090 | Os12g0580500 | - | Detail |
| C2H12g07749 | 12:20,066,655-20,067,379 | + | C1H12g26597 | CX12g016924 | LOC_Os12g39100 | Os12g0580600 | - | Detail |
| C2H12g07534 | 12:20,072,581-20,075,086 | + | C1H12g12444 | CX12g017133 | LOC_Os12g39110 | Os12g0580700 | OsAIR4, OsAIR4.1 | Detail |
| C2H12g22589 | 12:20,076,897-20,077,193 | + | C1H12g05027 | CX12g016825 | LOC_Os12g39120 | Os12g0580900 | - | Detail |
| C2H12g12775 | 12:20,077,760-20,079,632 | + | C1H12g00391 | CX12g016825 | LOC_Os12g39120 | Os12g0580900 | - | Detail |
| C2H12g21150 | 12:20,081,566-20,082,993 | - | C1H12g16049 | CX12g017764 | - | - | - | Detail |
| C2H12g06166 | 12:20,088,267-20,090,195 | - | C1H12g12051 | CX12g018264 | LOC_Os12g39160 | Os12g0581300 | - | Detail |
| C2H12g17485 | 12:20,111,894-20,119,343 | - | C1H12g04360 | CX12g015375 | LOC_Os12g39170 | Os12g0581400 | - | Detail |
| C2H12g06235 | 12:20,125,485-20,129,453 | - | C1H12g17583 | CX12g016634 | LOC_Os12g39180 | Os12g0581600 | OsNRAMP7 | Detail |
| C2H12g26736 | 12:20,137,054-20,141,078 | + | C1H12g12493 | CX12g017650 | LOC_Os12g39200 | Os12g0581700 | - | Detail |
| C2H12g04030 | 12:20,141,796-20,144,164 | + | C1H12g29095 | CX12g018592 | LOC_Os12g39210 | Os12g0581800 | - | Detail |
| C2H12g25433 | 12:20,145,226-20,145,828 | - | C1H12g23995 | CX12g015728 | LOC_Os12g39220 | Os12g0581900 | - | Detail |
| C2H12g22009 | 12:20,153,614-20,155,932 | - | C1H12g12082 | CX12g015419 | LOC_Os12g39300 | Os12g0582000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |