| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g04331 | 4:24,813,902-24,829,102 | - | C2H4g04717 | CX4g033771 | LOC_Os04g48040 | Os04g0568850 | - | Detail |
| C1H4g22901 | 4:24,830,480-24,833,687 | - | C2H4g27476 | CX4g035675 | LOC_Os04g48050 | Os04g0568900 | OsRINGzf1 | Detail |
| C1H4g15838 | 4:24,841,495-24,844,261 | + | C2H4g06051 | CX4g036264 | LOC_Os04g48060 | Os04g0569000 | OsRFC4 | Detail |
| C1H4g17902 | 4:24,845,482-24,851,178 | - | C2H4g02683 | CX4g033862 | LOC_Os04g48070 | Os04g0569100 | ROC4, Roc4 | Detail |
| C1H4g21535 | 4:24,863,538-24,864,951 | + | C2H4g16788 | CX4g035902 | LOC_Os04g48130 | Os04g0569300 | - | Detail |
| C1H4g08980 | 4:24,865,538-24,869,670 | - | C2H4g20649 | CX4g031968 | LOC_Os04g48140 | Os04g0569400 | - | Detail |
| C1H4g04673 | 4:24,879,306-24,881,874 | - | C2H4g00953 | CX4g034977 | LOC_Os04g48160 | Os04g0569900 | - | Detail |
| C1H4g18526 | 4:24,888,945-24,892,549 | - | C2H4g17853 | CX4g033784 | LOC_Os04g48170 | Os04g0570000 | CYP87A3 | Detail |
| C1H4g29930 | 4:24,907,678-24,918,669 | - | C2H4g14427 | CX4g031367 | LOC_Os04g48200 | Os04g0570600 | - | Detail |
| C1H4g03867 | 4:24,921,785-24,925,515 | - | C2H4g06266 | CX4g033156 | LOC_Os04g48230 | Os04g0570800 | - | Detail |
| C1H4g26163 | 4:24,936,770-24,939,350 | + | C2H4g17221 | CX4g033503 | LOC_Os04g48260 | Os04g0571200 | OsSIRH2-14, OsRFPH2-14 | Detail |
| C1H4g03569 | 4:24,943,001-24,945,096 | + | C2H4g10186 | CX4g033945 | LOC_Os04g48270 | Os04g0571300 | - | Detail |
| C1H4g17435 | 4:24,981,613-24,984,266 | + | C2H4g00338 | CX4g036388 | LOC_Os04g48310 | Os04g0571800 | - | Detail |
| C1H4g03855 | 4:25,023,809-25,026,567 | + | C2H4g15443 | - | LOC_Os04g48360 | Os04g0572500 | - | Detail |
| C1H4g24679 | 4:25,030,950-25,044,639 | + | C2H4g29441 | CX4g034848 | LOC_Os04g48370 | Os04g0572600 | OsNRPD1a, OsNRPD1 | Detail |
| C1H4g25752 | 4:25,046,823-25,050,719 | + | C2H4g24575 | CX2g023056 | LOC_Os04g48375 | Os04g0572700 | - | Detail |
| C1H4g21662 | 4:25,059,513-25,066,138 | + | C2H4g30282 | CX4g034449 | LOC_Os04g48390 | Os04g0573000 | OsSPX-MFS1 | Detail |
| C1H4g12510 | 4:25,067,322-25,070,260 | + | C2H4g07007 | CX4g032073 | LOC_Os04g48400 | Os04g0573100 | HTH1 | Detail |
| C1H4g01592 | 4:25,071,498-25,075,752 | + | C2H4g10763 | CX4g035514 | LOC_Os04g48410 | Os04g0573200 | - | Detail |
| C1H4g07049 | 4:25,076,021-25,078,351 | - | C2H4g08356 | CX4g035499 | LOC_Os04g48416 | Os04g0573300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g26145 | 1:17,380,958-17,391,445 | + | C1H1g30357 | CX1g001131 | LOC_Os01g33800 | Os01g0521500 | - | Detail |
| C2H1g21205 | 1:17,411,129-17,412,480 | + | C1H1g25202 | CX1g005107 | LOC_Os01g33910 | Os01g0522100 | - | Detail |
| C2H1g18568 | 1:17,430,070-17,433,767 | + | C1H1g08450 | CX1g005107 | LOC_Os01g33930 | Os01g0522950 | - | Detail |
| C2H1g11782 | 1:17,436,425-17,439,737 | + | C1H1g10941 | CX1g006523 | LOC_Os01g33950 | Os01g0523100 | - | Detail |
| C2H1g13197 | 1:17,448,535-17,456,498 | + | C1H1g09014 | CX1g005107 | LOC_Os01g34000 | Os01g0524100 | ESA1 | Detail |
| C2H1g22021 | 1:17,484,938-17,486,550 | + | C1H1g03031 | CX1g000293 | LOC_Os01g34060 | Os01g0863300 | - | Detail |
| C2H1g01344 | 1:17,499,948-17,510,518 | + | C1H1g05337 | CX1g003083 | LOC_Os01g34080 | Os01g0524700 | - | Detail |
| C2H1g28979 | 1:17,563,858-17,564,544 | + | C1H1g08661 | - | - | - | - | Detail |
| C2H1g17057 | 1:17,566,324-17,569,069 | + | C1H1g01010 | CX1g002923 | LOC_Os01g34190 | Os01g0526100 | - | Detail |
| C2H1g19688 | 1:17,570,292-17,573,584 | + | C1H1g10979 | CX1g003716 | LOC_Os01g34200 | Os01g0526200 | - | Detail |
| C2H1g06550 | 1:17,610,748-17,626,534 | + | C1H1g28687 | CX1g006793 | LOC_Os01g34330 | Os01g0527400 | - | Detail |
| C2H1g06422 | 1:17,627,454-17,632,664 | - | C1H1g03628 | CX1g000241 | LOC_Os01g34350 | Os01g0527600 | SHL2, shl2, SHL2, sh2, OsRDR6 | Detail |
| C2H1g29503 | 1:17,637,195-17,642,074 | - | C1H1g18093 | CX1g004192 | LOC_Os01g34390 | Os01g0527700 | - | Detail |
| C2H1g02847 | 1:17,644,764-17,656,610 | + | C1H1g30321 | CX1g007113 | LOC_Os01g34430 | Os01g0528000 | - | Detail |
| C2H1g18148 | 1:17,670,542-17,674,451 | + | C1H1g07483 | CX1g005291 | LOC_Os01g34480 | Os01g0528800 | - | Detail |
| C2H1g18703 | 1:17,680,683-17,681,510 | + | C1H1g28876 | CX1g001971 | LOC_Os10g41640 | Os01g0882200 | - | Detail |
| C2H1g14328 | 1:17,743,444-17,747,974 | + | C1H1g30939 | CX1g007129 | LOC_Os01g34610 | Os01g0530300 | - | Detail |
| C2H1g24993 | 1:17,749,795-17,750,411 | + | C1H1g00833 | - | - | Os01g0530341 | - | Detail |
| C2H1g24220 | 1:17,750,861-17,753,176 | + | C1H1g19948 | CX5g040030 | LOC_Os01g34614 | Os01g0530366 | - | Detail |
| C2H1g14488 | 1:17,756,204-17,758,500 | + | C1H1g13045 | CX1g002051 | LOC_Os01g34620 | Os01g0530400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |