| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10769 | 4:23,395,396-23,401,153 | - | C2H4g12110 | CX4g032688 | LOC_Os04g45580 | Os04g0538800 | - | Detail |
| C1H4g30025 | 4:23,406,939-23,407,746 | + | C2H4g10511 | - | LOC_Os04g45590 | Os04g0538900 | - | Detail |
| C1H4g16905 | 4:23,409,931-23,411,211 | + | C2H4g20122 | - | LOC_Os04g45600 | Os04g0539000 | - | Detail |
| C1H4g23975 | 4:23,411,847-23,415,025 | - | C2H4g25192 | CX4g032029 | LOC_Os04g45610 | Os04g0539100 | - | Detail |
| C1H4g17088 | 4:23,418,016-23,419,742 | - | C2H4g19707 | CX4g035647 | LOC_Os04g45630 | Os04g0539300 | - | Detail |
| C1H4g04536 | 4:23,428,238-23,430,862 | + | C2H4g18724 | CX4g033248 | LOC_Os04g45650 | Os04g0539500 | - | Detail |
| C1H4g13934 | 4:23,439,744-23,444,182 | - | C2H4g04312 | CX4g035492 | LOC_Os04g45670 | Os04g0539800 | - | Detail |
| C1H4g18759 | 4:23,451,256-23,452,965 | + | C2H4g29647 | CX4g031384 | LOC_Os04g45690 | Os04g0540200 | OsRIP1 | Detail |
| C1H4g25286 | 4:23,456,657-23,457,743 | + | C2H4g20715 | CX4g033676 | LOC_Os04g45700 | Os04g0540300 | - | Detail |
| C1H4g30808 | 4:23,457,814-23,458,674 | + | C2H4g20715 | CX4g033676 | LOC_Os04g45700 | Os04g0540300 | - | Detail |
| C1H4g25127 | 4:23,459,270-23,463,777 | - | C2H4g10305 | CX4g033064 | LOC_Os04g45720 | Os04g0540600 | - | Detail |
| C1H4g14597 | 4:23,468,787-23,470,455 | - | C2H4g09606 | CX4g036212 | LOC_Os04g45730 | Os04g0540900 | STRK1 | Detail |
| C1H4g08827 | 4:23,489,288-23,493,567 | - | C2H4g10705 | CX4g035032 | LOC_Os04g45750 | Os04g0541100 | - | Detail |
| C1H4g08954 | 4:23,512,752-23,520,292 | + | C2H4g12357 | CX4g033606 | LOC_Os04g45800 | Os04g0541500 | OsLCBK2 | Detail |
| C1H4g13532 | 4:23,524,551-23,525,490 | + | C2H4g17090 | CX4g034688 | LOC_Os04g45810 | Os04g0541700 | HOX22, Oshox22, OsHox22 | Detail |
| C1H4g31215 | 4:23,537,702-23,540,321 | + | C2H4g16789 | CX4g031805 | LOC_Os04g45821 | Os04g0541900 | - | Detail |
| C1H4g01207 | 4:23,550,168-23,553,637 | - | C2H4g15215 | CX4g036589 | LOC_Os04g45860 | Os04g0542200 | - | Detail |
| C1H4g26797 | 4:23,567,628-23,571,774 | - | C2H4g05921 | CX4g034574 | LOC_Os04g45900 | Os04g0542800 | YSL16, OsYSL16, Os-YSL16, OsYs14 | Detail |
| C1H4g00917 | 4:23,580,070-23,583,432 | + | C2H4g03772 | CX4g031872 | LOC_Os04g45910 | Os04g0542900 | - | Detail |
| C1H4g12022 | 4:23,583,743-23,585,388 | - | C2H4g18044 | CX4g033127 | LOC_Os04g45920 | Os04g0543000 | OsRLCK155 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g01681 | 9:13,681,021-13,684,172 | + | C1H9g16732 | CX9g055317 | LOC_Os09g26920 | Os09g0441000 | - | Detail |
| C2H9g14256 | 9:13,686,635-13,688,330 | - | C1H9g00795 | CX9g056608 | LOC_Os09g26940 | Os09g0441100 | - | Detail |
| C2H9g29608 | 9:13,695,289-13,696,109 | - | - | - | - | - | - | Detail |
| C2H9g11039 | 9:13,698,956-13,699,243 | + | C1H9g13952 | - | - | - | - | Detail |
| C2H9g06261 | 9:13,712,511-13,715,100 | + | C1H9g04789 | CX9g055711 | LOC_Os09g26960 | Os09g0441400 | - | Detail |
| C2H9g20934 | 9:13,717,585-13,720,216 | + | C1H9g04387 | CX9g057450 | LOC_Os09g26970 | Os09g0441600 | qGL9.1 | Detail |
| C2H9g16046 | 9:13,723,202-13,728,472 | - | C1H9g03625 | CX9g055711 | LOC_Os09g26980 | Os09g0441700 | - | Detail |
| C2H9g26101 | 9:13,737,002-13,742,890 | + | C1H9g22464 | CX9g057036 | LOC_Os09g26999 | Os09g0441900 | - | Detail |
| C2H9g18709 | 9:13,771,124-13,773,920 | - | C1H9g22007 | CX9g056107 | LOC_Os09g27010 | Os09g0442100 | - | Detail |
| C2H9g10492 | 9:13,787,469-13,792,222 | + | C1H9g14149 | CX9g055060 | LOC_Os09g27030 | Os09g0442300 | - | Detail |
| C2H9g27420 | 9:13,794,348-13,796,769 | + | C1H9g06228 | CX9g054851 | LOC_Os09g27040 | Os09g0442400 | OsGEX1 | Detail |
| C2H9g03487 | 9:13,802,362-13,805,866 | + | C1H9g28611 | CX9g058113 | LOC_Os09g27050 | Os09g0442600 | OsRSH3 | Detail |
| C2H9g20875 | 9:13,809,213-13,809,820 | - | C1H9g25409 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C2H9g29144 | 9:13,820,560-13,825,025 | - | C1H9g17795 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C2H9g18109 | 9:13,828,304-13,828,585 | + | C1H9g01438 | CX9g057769 | LOC_Os09g27070 | Os09g0442800 | - | Detail |
| C2H9g05302 | 9:13,834,070-13,838,764 | + | C1H9g25976 | CX9g056575 | LOC_Os09g27080 | Os09g0442900 | - | Detail |
| C2H9g09021 | 9:13,842,853-13,843,461 | + | C1H9g19048 | CX9g055406 | LOC_Os09g27100 | Os09g0443000 | - | Detail |
| C2H9g16776 | 9:13,853,540-13,856,823 | - | C1H9g16243 | CX9g054949 | LOC_Os09g27140 | Os09g0443500 | - | Detail |
| C2H9g27037 | 9:13,860,031-13,861,885 | - | C1H9g02557 | CX9g055154 | LOC_Os09g27150 | Os09g0544300 | - | Detail |
| C2H9g09304 | 9:13,863,378-13,864,400 | + | C1H9g23735 | CX9g056527 | LOC_Os09g27160 | Os09g0443800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |