| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g20746 | 4:22,729,779-22,730,441 | - | C2H4g23320 | CX4g035905 | LOC_Os04g44150 | Os04g0522500 | GA2ox6, OsGA2ox6 | Detail |
| C1H4g23550 | 4:22,748,829-22,751,862 | + | C2H4g07715 | CX4g032754 | LOC_Os04g44190 | Os04g0522800 | - | Detail |
| C1H4g25974 | 4:22,753,275-22,753,924 | + | C2H4g09820 | CX4g032876 | LOC_Os04g44200 | Os04g0523000 | - | Detail |
| C1H4g18322 | 4:22,754,033-22,758,861 | - | C2H4g17435 | CX4g032188 | LOC_Os04g44210 | Os04g0523100 | - | Detail |
| C1H4g27685 | 4:22,765,846-22,768,184 | - | C2H4g30482 | CX4g033622 | LOC_Os04g44220 | Os04g0523200 | - | Detail |
| C1H4g26193 | 4:22,769,718-22,770,356 | - | C2H4g08365 | CX4g033622 | LOC_Os04g44220 | Os04g0523350 | - | Detail |
| C1H4g02749 | 4:22,779,569-22,781,998 | + | C2H4g21642 | CX4g033677 | LOC_Os04g44230 | Os04g0523500 | OsCKX8 | Detail |
| C1H4g06045 | 4:22,783,910-22,784,748 | + | C2H4g21642 | CX4g033677 | LOC_Os04g44230 | Os04g0523500 | OsCKX8 | Detail |
| C1H4g20304 | 4:22,814,243-22,815,036 | + | C2H4g21424 | CX4g035143 | LOC_Os04g44280 | Os04g0524300 | RR5, rr5, OsRR5, Rra4, OsRRA4 | Detail |
| C1H4g10194 | 4:22,819,581-22,821,969 | + | C2H4g00588 | CX4g034041 | LOC_Os04g44290 | Os04g0524400 | - | Detail |
| C1H4g06080 | 4:22,823,502-22,827,603 | - | C2H4g16476 | CX4g031624 | LOC_Os04g44300 | Os04g0524500 | - | Detail |
| C1H4g31583 | 4:22,830,776-22,835,825 | + | C2H4g24580 | CX4g031624 | LOC_Os04g44320 | Os04g0524600 | - | Detail |
| C1H4g03289 | 4:22,838,767-22,841,732 | + | C2H4g13558 | CX4g035938 | LOC_Os04g44330 | Os04g0524900 | - | Detail |
| C1H4g04192 | 4:22,842,384-22,842,785 | - | C2H4g06209 | CX4g032796 | - | Os04g0524950 | - | Detail |
| C1H4g13077 | 4:22,843,251-22,845,077 | - | C2H4g24635 | CX4g036453 | LOC_Os04g44340 | Os04g0525000 | - | Detail |
| C1H4g11662 | 4:22,845,800-22,852,759 | - | C2H4g03449 | CX4g034629 | LOC_Os04g44354 | Os04g0525100 | - | Detail |
| C1H4g29555 | 4:22,861,129-22,866,307 | - | C2H4g02519 | CX4g035890 | LOC_Os04g44410 | Os04g0525700 | - | Detail |
| C1H4g21652 | 4:22,873,434-22,881,820 | + | C2H4g01154 | CX4g035136 | LOC_Os04g44430 | Os04g0525900 | - | Detail |
| C1H4g10699 | 4:22,889,186-22,893,128 | + | C2H4g30395 | CX4g035210 | - | Os04g0526200 | - | Detail |
| C1H4g09431 | 4:22,903,840-22,904,770 | - | C2H4g08104 | CX4g035727 | LOC_Os04g44500 | Os04g0526800 | OsABAR1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20719 | 3:12,657,846-12,662,011 | + | C1H3g00297 | CX3g029824 | LOC_Os03g25110 | Os03g0366700 | - | Detail |
| C2H3g16161 | 3:12,663,669-12,666,069 | - | C1H3g09693 | CX3g026720 | LOC_Os03g25120 | Os03g0366800 | OsHsfB4d | Detail |
| C2H3g05889 | 3:12,680,107-12,690,528 | + | C1H3g11212 | CX3g030531 | LOC_Os03g25140 | Os03g0367000 | - | Detail |
| C2H3g05330 | 3:12,699,863-12,706,390 | + | C1H3g27498 | CX3g026873 | LOC_Os03g25150 | Os03g0367200 | - | Detail |
| C2H3g27128 | 3:12,728,251-12,733,718 | + | C1H3g16020 | CX3g026804 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| C2H3g07803 | 3:12,737,903-12,739,716 | + | C1H3g25920 | CX3g026151 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| C2H3g22531 | 3:12,741,090-12,742,166 | - | C1H3g11101 | CX3g025169 | LOC_Os03g25300 | Os03g0368300 | - | Detail |
| C2H3g13125 | 3:12,753,395-12,753,733 | + | - | - | - | - | - | Detail |
| C2H3g20896 | 3:12,754,708-12,755,789 | + | - | - | LOC_Os03g25314 | - | - | Detail |
| C2H3g27289 | 3:12,759,905-12,761,668 | + | C1H3g13259 | CX3g025674 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| C2H3g12026 | 3:12,771,516-12,772,610 | + | C1H3g26852 | CX3g027878 | LOC_Os03g25330 | Os03g0368900 | - | Detail |
| C2H3g16356 | 3:12,779,596-12,781,116 | + | C1H3g17834 | CX3g025535 | LOC_Os03g25340 | Os03g0369000 | - | Detail |
| C2H3g01197 | 3:12,790,603-12,791,049 | + | C1H3g18190 | - | LOC_Os03g25350 | Os03g0369100 | OsLTPL36, OsCIP1 | Detail |
| C2H3g22819 | 3:12,793,639-12,795,020 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g30332 | 3:12,808,380-12,812,544 | + | - | CX8g053307 | - | - | - | Detail |
| C2H3g12054 | 3:12,815,156-12,816,297 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g12152 | 3:12,821,652-12,822,789 | + | C1H3g00052 | CX3g027308 | LOC_Os03g25370 | Os03g0369000 | - | Detail |
| C2H3g10905 | 3:12,826,088-12,826,663 | + | - | - | - | Os03g0369600 | - | Detail |
| C2H3g04844 | 3:12,829,824-12,831,377 | + | C1H3g00982 | CX3g030217 | LOC_Os03g25380 | Os03g0369700 | - | Detail |
| C2H3g02553 | 3:12,831,824-12,834,946 | - | C1H3g26552 | CX3g027718 | LOC_Os03g25390 | Os03g0369800 | OsNPSN12 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |