| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g11981 | 4:22,247,167-22,262,155 | - | C2H4g20441 | CX4g034232 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| C1H4g16776 | 4:22,265,929-22,266,408 | + | C2H4g11339 | CX4g036588 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| C1H4g16652 | 4:22,273,773-22,275,269 | + | C2H4g01906 | CX2g024932 | LOC_Os04g43070 | Os04g0509600 | - | Detail |
| C1H4g26953 | 4:22,289,040-22,297,319 | + | C2H4g26482 | CX4g031449 | LOC_Os04g43130 | Os04g0510300 | - | Detail |
| C1H4g20471 | 4:22,297,962-22,303,906 | - | C2H4g00596 | CX4g031438 | LOC_Os04g43140 | Os04g0510400 | - | Detail |
| C1H4g03093 | 4:22,306,343-22,311,917 | + | C2H4g19563 | CX4g035958 | LOC_Os04g43150 | Os04g0510500 | - | Detail |
| C1H4g15211 | 4:22,312,483-22,313,610 | - | C2H4g02205 | CX4g032117 | LOC_Os04g43160 | Os04g0510600 | - | Detail |
| C1H4g29813 | 4:22,314,260-22,316,880 | - | C2H4g20983 | CX4g033894 | LOC_Os04g43164 | Os04g0510700 | - | Detail |
| C1H4g14181 | 4:22,318,026-22,318,794 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g12029 | 4:22,319,072-22,319,383 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g05553 | 4:22,324,231-22,325,673 | - | C2H4g15069 | CX4g033517 | LOC_Os04g43200 | Os04g0511200 | OsClo5, OsEFA27 | Detail |
| C1H4g09400 | 4:22,327,296-22,329,770 | - | C2H4g28433 | CX4g033340 | LOC_Os04g43210 | Os04g0511400 | - | Detail |
| C1H4g08179 | 4:22,333,306-22,339,230 | - | C2H4g23749 | CX4g035801 | LOC_Os04g43220 | Os04g0511600 | - | Detail |
| C1H4g06483 | 4:22,340,677-22,342,821 | - | C2H4g20352 | CX4g032463 | LOC_Os04g43230 | Os04g0511700 | - | Detail |
| C1H4g23962 | 4:22,345,909-22,354,374 | - | C2H4g11071 | CX4g032044 | LOC_Os04g43270 | Os04g0512200 | - | Detail |
| C1H4g05127 | 4:22,357,820-22,358,279 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g13576 | 4:22,359,001-22,360,364 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g19931 | 4:22,360,962-22,365,118 | - | C2H4g16701 | CX4g034378 | LOC_Os04g43300 | Os04g0512400 | - | Detail |
| C1H4g27340 | 4:22,367,404-22,367,799 | - | C2H4g10802 | CX4g035063 | LOC_Os04g43310 | Os04g0512500 | - | Detail |
| C1H4g13563 | 4:22,380,486-22,385,136 | - | C2H4g29440 | CX4g033268 | LOC_Os04g43340 | Os04g0512900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g16453 | 2:2,472,866-2,476,401 | - | C1H2g14077 | CX2g019747 | LOC_Os02g05660 | Os02g0150100 | - | Detail |
| C2H2g10679 | 2:2,485,420-2,488,156 | + | C1H2g22203 | - | LOC_Os02g05680 | Os02g0150300 | - | Detail |
| C2H2g28552 | 2:2,489,286-2,493,600 | + | C1H2g04684 | CX2g018988 | LOC_Os02g09790 | Os02g0286850 | - | Detail |
| C2H2g02218 | 2:2,497,090-2,501,276 | + | C1H2g03457 | CX2g020416 | LOC_Os02g05692 | Os02g0150700 | OsDHSRP1 | Detail |
| C2H2g02918 | 2:2,504,624-2,508,273 | + | C1H2g10911 | CX2g021275 | LOC_Os02g05700 | Os02g0150800 | OsZTL1 | Detail |
| C2H2g19150 | 2:2,509,642-2,512,586 | - | C1H2g16735 | CX2g022629 | LOC_Os02g05710 | Os02g0150900 | - | Detail |
| C2H2g10999 | 2:2,522,143-2,528,071 | - | C1H2g10714 | CX2g021128 | LOC_Os02g05730 | Os02g0151100 | - | Detail |
| C2H2g14489 | 2:2,529,886-2,535,220 | - | C1H2g03046 | CX2g019402 | LOC_Os02g05744 | Os02g0151300 | - | Detail |
| C2H2g24062 | 2:2,544,832-2,550,461 | + | C1H2g11128 | CX2g020856 | LOC_Os02g05770 | Os02g0151400 | - | Detail |
| C2H2g19146 | 2:2,556,497-2,560,594 | + | C1H2g05884 | CX2g021034 | LOC_Os02g05820 | Os02g0152300 | - | Detail |
| C2H2g26042 | 2:2,561,670-2,562,661 | + | C1H2g10224 | CX2g020432 | LOC_Os02g05830 | Os02g0152400 | RbcS1, OsRBCS1, OsRbcS1 | Detail |
| C2H2g00493 | 2:2,562,264-2,568,957 | - | C1H2g09085 | CX2g024888 | LOC_Os02g05840 | Os02g0152500 | - | Detail |
| C2H2g16173 | 2:2,575,129-2,579,390 | - | C1H2g06159 | CX2g023661 | LOC_Os02g05870 | Os02g0152600 | - | Detail |
| C2H2g26431 | 2:2,580,377-2,593,828 | - | C1H2g27785 | CX2g019434 | LOC_Os02g05880 | Os02g0152700 | OsNRPE1, FEM3 | Detail |
| C2H2g09396 | 2:2,598,710-2,601,013 | - | C1H2g20010 | CX2g024806 | LOC_Os02g05890 | Os02g0152900 | YL1 | Detail |
| C2H2g06285 | 2:2,604,030-2,608,866 | + | C1H2g04114 | CX2g019870 | LOC_Os02g05900 | Os02g0153000 | - | Detail |
| C2H2g10613 | 2:2,610,734-2,613,877 | - | C1H2g21236 | CX2g019353 | LOC_Os02g05910 | Os02g0153100 | LRK8 | Detail |
| C2H2g02191 | 2:2,614,903-2,617,998 | - | C1H2g21236 | CX2g019353 | LOC_Os02g05920 | Os02g0153200 | LRK7 | Detail |
| C2H2g23869 | 2:2,622,229-2,631,246 | - | C1H2g11534 | CX2g023705 | LOC_Os02g05940 | Os02g0153500 | LRK5 | Detail |
| C2H2g16848 | 2:2,634,462-2,634,891 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |