| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24120 | 4:21,658,006-21,665,045 | - | C2H4g02441 | CX4g035949 | LOC_Os04g41950 | Os04g0496800 | - | Detail |
| C1H4g16028 | 4:21,666,662-21,668,313 | - | C2H4g29152 | CX4g032219 | LOC_Os04g41960 | Os04g0497000 | - | Detail |
| C1H4g00212 | 4:21,674,052-21,677,840 | - | C2H4g15097 | CX4g033375 | LOC_Os04g41970 | Os04g0497200 | OsGLU3 | Detail |
| C1H4g06619 | 4:21,684,026-21,684,411 | + | C2H4g03902 | CX4g036664 | LOC_Os04g41980 | Os04g0497300 | - | Detail |
| C1H4g16966 | 4:21,684,928-21,686,094 | - | C2H4g24147 | CX4g034539 | LOC_Os04g41990 | Os04g0497350 | OsATG10a | Detail |
| C1H4g21848 | 4:21,686,849-21,689,820 | - | C2H4g16343 | CX4g034309 | LOC_Os04g42000 | Os04g0497400 | - | Detail |
| C1H4g01341 | 4:21,690,598-21,694,571 | - | C2H4g27408 | CX4g031377 | LOC_Os04g42010 | Os04g0497600 | OsLa1 | Detail |
| C1H4g30019 | 4:21,697,596-21,698,703 | + | C2H4g04925 | CX4g031426 | LOC_Os04g42020 | Os04g0497700 | - | Detail |
| C1H4g01078 | 4:21,699,794-21,701,671 | + | C2H4g17364 | CX4g034966 | LOC_Os04g42030 | Os04g0497900 | SWL1 | Detail |
| C1H4g31513 | 4:21,701,767-21,702,191 | - | - | - | - | - | - | Detail |
| C1H4g01769 | 4:21,703,769-21,705,704 | + | C2H4g10025 | CX4g035157 | LOC_Os04g42040 | Os04g0498000 | - | Detail |
| C1H4g22399 | 4:21,711,685-21,713,810 | - | C2H4g24359 | CX4g033954 | - | Os04g0498200 | - | Detail |
| C1H4g02598 | 4:21,713,899-21,714,376 | - | - | - | - | - | - | Detail |
| C1H4g06863 | 4:21,716,102-21,716,449 | - | - | CX7g046065 | - | - | - | Detail |
| C1H4g24329 | 4:21,719,091-21,722,310 | + | - | CX4g034831 | LOC_Os04g42095 | - | - | Detail |
| C1H4g07127 | 4:21,724,482-21,728,730 | - | C2H4g02540 | CX4g035609 | LOC_Os04g42100 | Os04g0498700 | - | Detail |
| C1H4g28042 | 4:21,730,678-21,734,356 | + | C2H4g27959 | CX4g036667 | LOC_Os04g42110 | Os04g0498800 | - | Detail |
| C1H4g30393 | 4:21,734,901-21,736,948 | - | C2H4g04345 | CX4g033443 | LOC_Os04g42120 | Os04g0498900 | - | Detail |
| C1H4g22736 | 4:21,737,317-21,738,256 | - | - | - | - | - | - | Detail |
| C1H4g24350 | 4:21,740,272-21,742,769 | + | C2H4g13494 | CX4g032632 | LOC_Os04g42130 | Os04g0499100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23186 | 1:27,269,220-27,271,527 | + | C1H1g25026 | CX1g000184 | LOC_Os01g53240 | Os01g0733500 | - | Detail |
| C2H1g16933 | 1:27,272,531-27,277,968 | - | C1H1g17481 | CX1g001304 | LOC_Os01g53250 | Os01g0733600 | - | Detail |
| C2H1g28398 | 1:27,285,980-27,289,362 | + | C1H1g18098 | CX1g001858 | LOC_Os01g53260 | Os01g0734000 | OsWRKY23 | Detail |
| C2H1g03923 | 1:27,293,250-27,293,800 | + | C1H1g05786 | CX1g006620 | LOC_Os01g53280 | Os01g0734100 | - | Detail |
| C2H1g19534 | 1:27,304,010-27,311,886 | + | C1H1g09802 | CX1g004251 | LOC_Os01g53294 | Os01g0734200 | OsRbohA, OsNOX2 | Detail |
| C2H1g09241 | 1:27,326,536-27,327,972 | + | C1H1g16727 | CX1g003337 | LOC_Os01g53350 | Os01g0734800 | - | Detail |
| C2H1g27577 | 1:27,338,608-27,340,083 | + | C1H1g17596 | CX1g000021 | LOC_Os01g53370 | Os01g0735300 | - | Detail |
| C2H1g28000 | 1:27,363,984-27,365,414 | - | C1H1g12410 | CX1g004334 | LOC_Os01g53420 | Os01g0735900 | - | Detail |
| C2H1g20968 | 1:27,364,009-27,365,288 | + | - | - | - | Os01g0735450 | - | Detail |
| C2H1g21886 | 1:27,365,328-27,367,380 | + | - | - | - | - | - | Detail |
| C2H1g03039 | 1:27,370,524-27,371,948 | - | C1H1g11199 | CX1g005230 | LOC_Os01g53430 | Os01g0736100 | - | Detail |
| C2H1g19693 | 1:27,379,721-27,381,136 | - | C1H1g10989 | CX1g005230 | LOC_Os01g53460 | Os01g0736300 | OsUGT706D1 | Detail |
| C2H1g23129 | 1:27,381,416-27,384,963 | + | C1H1g04228 | CX1g005942 | LOC_Os01g53450 | Os01g0736400 | - | Detail |
| C2H1g09664 | 1:27,386,344-27,387,096 | + | C1H1g11257 | CX1g003434 | LOC_Os01g53470 | Os01g0736500 | - | Detail |
| C2H1g22559 | 1:27,401,377-27,403,368 | + | C1H1g18188 | CX1g003962 | LOC_Os01g53520 | Os01g0736900 | - | Detail |
| C2H1g29848 | 1:27,411,208-27,418,789 | + | C1H1g17501 | CX1g006682 | LOC_Os01g53560 | Os01g0737300 | - | Detail |
| C2H1g21171 | 1:27,420,379-27,421,816 | + | C1H1g26053 | CX1g007234 | LOC_Os01g53570 | Os01g0737500 | - | Detail |
| C2H1g23141 | 1:27,421,843-27,422,460 | + | C1H1g26053 | CX1g007234 | - | Os01g0221600 | OsALMT4 | Detail |
| C2H1g28481 | 1:27,428,371-27,429,000 | + | C1H1g28789 | CX1g001301 | LOC_Os01g53590 | Os01g0737700 | - | Detail |
| C2H1g06822 | 1:27,430,737-27,435,013 | - | C1H1g20246 | CX1g004371 | LOC_Os01g53600 | Os01g0737800 | OsERA1, OsERA1.1, OsPFT-β | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |