| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02326 | 4:20,896,673-20,899,990 | + | C2H4g22198 | CX4g032128 | LOC_Os04g40400 | Os04g0480100 | - | Detail |
| C1H4g02234 | 4:20,902,082-20,903,078 | - | C2H4g13593 | CX4g035970 | LOC_Os04g40410 | Os04g0480200 | OsNAR2.2 | Detail |
| C1H4g08203 | 4:20,904,190-20,908,641 | + | C2H4g10651 | CX4g031651 | LOC_Os04g40420 | Os04g0480300 | - | Detail |
| C1H4g03377 | 4:20,909,487-20,912,056 | + | C2H4g01241 | CX4g032839 | LOC_Os04g40430 | Os04g0480400 | - | Detail |
| C1H4g22344 | 4:20,912,878-20,916,215 | + | C2H4g02108 | CX4g034579 | LOC_Os04g40440 | Os04g0480500 | - | Detail |
| C1H4g27047 | 4:20,918,563-20,921,371 | - | C2H4g07141 | CX4g035688 | LOC_Os04g40460 | Os04g0480700 | - | Detail |
| C1H4g02669 | 4:20,924,852-20,926,721 | - | C2H4g07141 | CX4g035688 | LOC_Os04g40470 | Os04g0480650 | - | Detail |
| C1H4g02386 | 4:20,928,495-20,928,960 | + | - | - | - | - | - | Detail |
| C1H4g27434 | 4:20,928,997-20,929,529 | + | C2H4g24183 | - | - | - | - | Detail |
| C1H4g22198 | 4:20,929,658-20,932,966 | + | C2H4g27287 | CX4g035420 | LOC_Os04g40490 | Os04g0480900 | - | Detail |
| C1H4g12967 | 4:20,934,834-20,937,355 | + | C2H4g06758 | CX4g035420 | LOC_Os04g40500 | Os04g0481000 | - | Detail |
| C1H4g27122 | 4:20,944,626-20,945,225 | + | C2H4g19832 | CX4g035145 | LOC_Os04g40510 | Os04g0481200 | - | Detail |
| C1H4g09900 | 4:20,945,245-20,945,463 | + | C2H4g19832 | CX4g035145 | LOC_Os04g40510 | Os04g0481200 | - | Detail |
| C1H4g04059 | 4:20,945,849-20,946,997 | + | C2H4g19832 | CX4g035145 | LOC_Os04g40510 | Os04g0481200 | - | Detail |
| C1H4g30807 | 4:20,947,263-20,951,458 | - | C2H4g27069 | CX4g033422 | LOC_Os04g40520 | Os04g0481100 | - | Detail |
| C1H4g28363 | 4:20,952,591-20,953,780 | + | C2H4g01816 | CX4g032691 | LOC_Os04g40530 | Os04g0481300 | - | Detail |
| C1H4g26467 | 4:20,954,257-20,956,070 | - | C2H4g14800 | CX4g033470 | LOC_Os04g40540 | Os04g0481400 | PIMT2, OsPIMT2 | Detail |
| C1H4g30891 | 4:20,957,077-20,958,765 | - | C2H4g02100 | CX4g036535 | LOC_Os04g40550 | Os04g0481500 | - | Detail |
| C1H4g04703 | 4:20,975,783-20,980,278 | + | C2H4g05692 | CX4g036548 | LOC_Os04g40570 | Os04g0481700 | - | Detail |
| C1H4g19577 | 4:20,985,447-20,986,827 | - | C2H4g06893 | CX4g033202 | LOC_Os04g40600 | Os04g0482000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g14560 | 9:18,510,240-18,511,177 | - | - | - | - | Os09g0551000 | - | Detail |
| C2H9g15560 | 9:18,511,260-18,519,351 | - | C1H9g00756 | CX9g057667 | LOC_Os09g37834 | Os09g0551000 | - | Detail |
| C2H9g18567 | 9:18,519,786-18,522,730 | - | C1H9g00756 | CX9g057667 | LOC_Os09g37840 | Os09g0551201 | SDK1 | Detail |
| C2H9g30036 | 9:18,524,325-18,526,305 | - | C1H9g14993 | CX9g057667 | LOC_Os09g37840 | Os09g0551201 | SDK1 | Detail |
| C2H9g10203 | 9:18,526,418-18,530,520 | - | C1H9g14993 | CX9g057667 | LOC_Os09g37840 | Os09g0551251 | SDK11 | Detail |
| C2H9g23601 | 9:18,536,271-18,541,647 | + | C1H9g23922 | CX9g055805 | LOC_Os09g37860 | Os09g0551300 | - | Detail |
| C2H9g18325 | 9:18,549,604-18,553,469 | + | C1H9g22027 | CX9g057667 | LOC_Os09g37840 | Os09g0551400 | SDRLK-42 | Detail |
| C2H9g05665 | 9:18,554,819-18,560,466 | - | C1H9g23767 | CX9g057667 | LOC_Os09g37840 | Os09g0551500 | SDRLK-43 | Detail |
| C2H9g09248 | 9:18,564,920-18,566,709 | + | C1H9g20157 | CX9g055996 | LOC_Os09g37910 | Os09g0551600 | - | Detail |
| C2H9g00765 | 9:18,568,706-18,576,273 | - | C1H9g09501 | CX9g055169 | LOC_Os09g37920 | Os09g0551800 | - | Detail |
| C2H9g18827 | 9:18,576,747-18,585,978 | - | C1H9g15933 | CX9g057646 | LOC_Os09g37930 | - | - | Detail |
| C2H9g26371 | 9:18,591,347-18,594,122 | - | C1H9g08089 | CX9g054990 | LOC_Os09g37949 | Os09g0552300 | - | Detail |
| C2H9g23182 | 9:18,597,456-18,599,241 | - | C1H9g25273 | CX9g055948 | LOC_Os09g37958 | Os09g0552600 | - | Detail |
| C2H9g28554 | 9:18,601,445-18,602,602 | - | C1H9g09840 | CX9g056393 | LOC_Os09g37976 | Os09g0552600 | - | Detail |
| C2H9g14226 | 9:18,606,239-18,608,507 | + | C1H9g15676 | CX9g054872 | LOC_Os09g38000 | Os09g0552800 | OsNAC109, YL3 | Detail |
| C2H9g12533 | 9:18,611,084-18,613,215 | + | C1H9g26813 | CX9g057788 | LOC_Os09g38010 | Os09g0552900 | - | Detail |
| C2H9g10941 | 9:18,620,794-18,625,942 | + | C1H9g17635 | CX9g055376 | LOC_Os09g38030 | Os09g0553200 | UGP1, Ugp1, OsUgp1, UGP2, UGP3 | Detail |
| C2H9g21953 | 9:18,626,744-18,629,492 | - | C1H9g26934 | CX9g058064 | LOC_Os09g38040 | Os09g0553300 | - | Detail |
| C2H9g19006 | 9:18,634,233-18,638,099 | + | C1H9g10869 | CX9g056104 | LOC_Os09g38060 | Os09g0553600 | - | Detail |
| C2H9g11910 | 9:18,640,615-18,641,481 | - | C1H9g05696 | - | LOC_Os09g38070 | Os09g0553700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |