| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g28080 | 4:20,751,300-20,752,871 | - | C2H4g06421 | CX4g034856 | LOC_Os04g39980 | Os04g0475600 | DAO | Detail |
| C1H4g09528 | 4:20,768,585-20,770,968 | + | C2H4g03255 | CX4g033390 | LOC_Os04g40030 | Os04g0476000 | - | Detail |
| C1H4g27545 | 4:20,771,754-20,778,207 | - | C2H4g11644 | CX4g033811 | LOC_Os04g40040 | Os04g0476100 | - | Detail |
| C1H4g01159 | 4:20,785,800-20,794,664 | + | C2H4g01499 | CX4g033662 | LOC_Os04g40050 | Os04g0476400 | - | Detail |
| C1H4g20165 | 4:20,795,809-20,800,404 | + | C2H4g21737 | CX4g033662 | LOC_Os04g40060 | Os04g0476500 | - | Detail |
| C1H4g28689 | 4:20,801,891-20,808,395 | + | C2H4g08434 | CX4g034928 | LOC_Os04g40070 | Os04g0476600 | - | Detail |
| C1H4g22382 | 4:20,809,335-20,812,531 | + | C2H4g27838 | CX4g036402 | LOC_Os04g40080 | Os04g0476700 | OsIRL3 | Detail |
| C1H4g14627 | 4:20,812,852-20,817,534 | - | C2H4g01330 | CX4g031992 | LOC_Os04g40090 | Os04g0476800 | OsNBR1 | Detail |
| C1H4g19548 | 4:20,821,850-20,824,134 | + | C2H4g29662 | CX4g034194 | LOC_Os04g40100 | Os04g0477000 | - | Detail |
| C1H4g16625 | 4:20,827,441-20,827,929 | - | C2H4g02766 | CX4g033655 | LOC_Os04g40120 | Os04g0477100 | - | Detail |
| C1H4g22165 | 4:20,829,229-20,835,033 | - | C2H4g28888 | CX4g031850 | LOC_Os04g40130 | Os04g0477200 | - | Detail |
| C1H4g04341 | 4:20,839,032-20,841,960 | - | C2H4g16963 | CX4g035932 | LOC_Os04g40150 | Os04g0477500 | - | Detail |
| C1H4g30761 | 4:20,853,548-20,855,224 | + | C2H4g03853 | CX4g032211 | LOC_Os04g40180 | Os04g0477900 | - | Detail |
| C1H4g19712 | 4:20,855,513-20,859,706 | + | C2H4g11207 | CX4g035771 | LOC_Os04g40290 | Os04g0479000 | CRC1 | Detail |
| C1H4g01004 | 4:20,860,175-20,863,388 | - | C2H4g19162 | CX4g036544 | LOC_Os04g40300 | Os04g0479100 | - | Detail |
| C1H4g10287 | 4:20,864,372-20,867,997 | - | C2H4g07894 | CX4g033124 | LOC_Os04g40310 | Os04g0479200 | - | Detail |
| C1H4g28704 | 4:20,869,540-20,872,337 | - | C2H4g17535 | CX4g033414 | LOC_Os04g40320 | Os04g0479300 | - | Detail |
| C1H4g05029 | 4:20,875,603-20,878,480 | - | C2H4g08628 | CX4g035703 | LOC_Os04g40330 | Os04g0479500 | - | Detail |
| C1H4g29506 | 4:20,884,039-20,887,612 | + | C2H4g04586 | CX4g034298 | LOC_Os04g40370 | Os04g0479800 | - | Detail |
| C1H4g07932 | 4:20,891,586-20,892,203 | - | C2H4g28967 | CX4g035464 | - | Os04g0480050 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17746 | 3:5,298,248-5,304,864 | + | C1H3g17331 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C2H3g08543 | 3:5,305,257-5,310,545 | + | C1H3g12951 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C2H3g18859 | 3:5,311,539-5,315,043 | + | C1H3g14932 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C2H3g25555 | 3:5,315,485-5,320,858 | - | C1H3g10644 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C2H3g22606 | 3:5,325,484-5,328,881 | - | C1H3g04750 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C2H3g22039 | 3:5,331,057-5,334,978 | + | C1H3g15538 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C2H3g03744 | 3:5,337,484-5,342,418 | - | C1H3g09681 | - | - | - | - | Detail |
| C2H3g29664 | 3:5,344,016-5,347,863 | - | C1H3g00304 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C2H3g24849 | 3:5,374,993-5,381,339 | + | C1H3g11825 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C2H3g11270 | 3:5,386,951-5,389,327 | - | C1H3g00757 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g18287 | 3:5,395,313-5,395,507 | - | C1H3g04456 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g25916 | 3:5,416,591-5,421,828 | + | C1H3g30377 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C2H3g12512 | 3:5,422,610-5,426,000 | + | C1H3g02997 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C2H3g19342 | 3:5,426,491-5,428,521 | - | C1H3g12813 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C2H3g13701 | 3:5,436,359-5,437,252 | - | C1H3g00186 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C2H3g30038 | 3:5,450,317-5,452,147 | + | C1H3g15045 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C2H3g29170 | 3:5,452,840-5,453,269 | + | - | - | - | - | - | Detail |
| C2H3g05049 | 3:5,453,922-5,455,100 | - | C1H3g15740 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C2H3g19799 | 3:5,456,253-5,457,305 | - | C1H3g17461 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C2H3g02073 | 3:5,459,766-5,463,790 | + | C1H3g21782 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |