| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g28080 | 4:20,751,300-20,752,871 | - | C2H4g06421 | CX4g034856 | LOC_Os04g39980 | Os04g0475600 | DAO | Detail |
| C1H4g09528 | 4:20,768,585-20,770,968 | + | C2H4g03255 | CX4g033390 | LOC_Os04g40030 | Os04g0476000 | - | Detail |
| C1H4g27545 | 4:20,771,754-20,778,207 | - | C2H4g11644 | CX4g033811 | LOC_Os04g40040 | Os04g0476100 | - | Detail |
| C1H4g01159 | 4:20,785,800-20,794,664 | + | C2H4g01499 | CX4g033662 | LOC_Os04g40050 | Os04g0476400 | - | Detail |
| C1H4g20165 | 4:20,795,809-20,800,404 | + | C2H4g21737 | CX4g033662 | LOC_Os04g40060 | Os04g0476500 | - | Detail |
| C1H4g28689 | 4:20,801,891-20,808,395 | + | C2H4g08434 | CX4g034928 | LOC_Os04g40070 | Os04g0476600 | - | Detail |
| C1H4g22382 | 4:20,809,335-20,812,531 | + | C2H4g27838 | CX4g036402 | LOC_Os04g40080 | Os04g0476700 | OsIRL3 | Detail |
| C1H4g14627 | 4:20,812,852-20,817,534 | - | C2H4g01330 | CX4g031992 | LOC_Os04g40090 | Os04g0476800 | OsNBR1 | Detail |
| C1H4g19548 | 4:20,821,850-20,824,134 | + | C2H4g29662 | CX4g034194 | LOC_Os04g40100 | Os04g0477000 | - | Detail |
| C1H4g16625 | 4:20,827,441-20,827,929 | - | C2H4g02766 | CX4g033655 | LOC_Os04g40120 | Os04g0477100 | - | Detail |
| C1H4g22165 | 4:20,829,229-20,835,033 | - | C2H4g28888 | CX4g031850 | LOC_Os04g40130 | Os04g0477200 | - | Detail |
| C1H4g04341 | 4:20,839,032-20,841,960 | - | C2H4g16963 | CX4g035932 | LOC_Os04g40150 | Os04g0477500 | - | Detail |
| C1H4g30761 | 4:20,853,548-20,855,224 | + | C2H4g03853 | CX4g032211 | LOC_Os04g40180 | Os04g0477900 | - | Detail |
| C1H4g19712 | 4:20,855,513-20,859,706 | + | C2H4g11207 | CX4g035771 | LOC_Os04g40290 | Os04g0479000 | CRC1 | Detail |
| C1H4g01004 | 4:20,860,175-20,863,388 | - | C2H4g19162 | CX4g036544 | LOC_Os04g40300 | Os04g0479100 | - | Detail |
| C1H4g10287 | 4:20,864,372-20,867,997 | - | C2H4g07894 | CX4g033124 | LOC_Os04g40310 | Os04g0479200 | - | Detail |
| C1H4g28704 | 4:20,869,540-20,872,337 | - | C2H4g17535 | CX4g033414 | LOC_Os04g40320 | Os04g0479300 | - | Detail |
| C1H4g05029 | 4:20,875,603-20,878,480 | - | C2H4g08628 | CX4g035703 | LOC_Os04g40330 | Os04g0479500 | - | Detail |
| C1H4g29506 | 4:20,884,039-20,887,612 | + | C2H4g04586 | CX4g034298 | LOC_Os04g40370 | Os04g0479800 | - | Detail |
| C1H4g07932 | 4:20,891,586-20,892,203 | - | C2H4g28967 | CX4g035464 | - | Os04g0480050 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g30168 | 1:28,289,444-28,299,703 | - | C1H1g02918 | CX1g003911 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| C2H1g05126 | 1:28,304,985-28,308,924 | + | C1H1g08295 | CX1g003221 | LOC_Os01g55190 | Os01g0756600 | - | Detail |
| C2H1g22597 | 1:28,318,179-28,320,472 | + | C1H1g21813 | CX1g002081 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| C2H1g23299 | 1:28,338,570-28,340,635 | + | C1H1g15032 | CX1g004140 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| C2H1g18562 | 1:28,350,390-28,354,778 | + | C1H1g13228 | CX1g001542 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| C2H1g15915 | 1:28,355,293-28,358,083 | - | C1H1g20677 | CX1g000631 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| C2H1g24400 | 1:28,364,442-28,366,634 | - | C1H1g01435 | CX1g004257 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| C2H1g24899 | 1:28,374,828-28,378,687 | - | C1H1g01756 | CX1g006495 | LOC_Os01g55290 | Os01g0757700 | - | Detail |
| C2H1g22215 | 1:28,378,797-28,384,540 | + | C1H1g09106 | CX1g003762 | LOC_Os01g55300 | Os01g0757800 | - | Detail |
| C2H1g22679 | 1:28,384,600-28,387,735 | - | C1H1g06019 | CX1g005426 | LOC_Os01g55310 | Os01g0757900 | - | Detail |
| C2H1g13025 | 1:28,389,007-28,389,551 | - | C1H1g04207 | CX1g002989 | LOC_Os01g55320 | Os01g0758000 | - | Detail |
| C2H1g30086 | 1:28,407,994-28,413,990 | - | C1H1g13262 | CX1g006023 | LOC_Os01g55350 | Os01g0758300 | - | Detail |
| C2H1g17375 | 1:28,418,167-28,425,943 | - | - | - | - | - | - | Detail |
| C2H1g29396 | 1:28,473,173-28,476,145 | + | C1H1g00696 | CX1g004565 | LOC_Os01g55410 | Os01g0758900 | - | Detail |
| C2H1g14233 | 1:28,482,003-28,482,901 | + | C1H1g24935 | CX1g005946 | LOC_Os01g55420 | Os01g0759000 | - | Detail |
| C2H1g23330 | 1:28,483,746-28,485,982 | - | C1H1g27055 | CX1g002012 | LOC_Os01g55430 | Os01g0759100 | - | Detail |
| C2H1g17948 | 1:28,489,485-28,490,378 | + | C1H1g18342 | CX1g006544 | - | Os01g0159000 | OsDOG1L-1 | Detail |
| C2H1g19008 | 1:28,499,891-28,504,941 | - | C1H1g03820 | CX1g003443 | LOC_Os01g55450 | Os01g0759400 | - | Detail |
| C2H1g00211 | 1:28,513,090-28,517,518 | + | C1H1g27932 | CX1g002187 | LOC_Os01g55490 | Os01g0759700 | - | Detail |
| C2H1g11945 | 1:28,519,831-28,523,993 | + | C1H1g25715 | CX1g003122 | LOC_Os01g55500 | Os01g0759900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |