| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g16030 | 4:20,604,880-20,606,065 | - | C2H4g00702 | CX4g033693 | LOC_Os04g39590 | Os04g0472100 | - | Detail |
| C1H4g00073 | 4:20,614,279-20,618,635 | + | C2H4g19420 | CX4g034292 | LOC_Os04g39610 | Os04g0472300 | - | Detail |
| C1H4g04352 | 4:20,623,859-20,625,361 | + | C2H4g22876 | CX4g035839 | LOC_Os04g39629 | Os04g0306800 | - | Detail |
| C1H4g27433 | 4:20,627,409-20,631,175 | + | C2H4g22876 | CX4g035839 | LOC_Os04g39629 | Os04g0472400 | - | Detail |
| C1H4g18621 | 4:20,634,438-20,638,146 | + | C2H4g05936 | CX4g035839 | LOC_Os04g39650 | Os04g0472500 | - | Detail |
| C1H4g21886 | 4:20,640,550-20,643,687 | + | C2H4g02841 | CX4g035542 | LOC_Os04g39670 | Os04g0472700 | - | Detail |
| C1H4g18594 | 4:20,648,275-20,650,781 | - | C2H4g20727 | CX4g031996 | LOC_Os04g39700 | Os04g0473400 | RPL6 | Detail |
| C1H4g22390 | 4:20,652,338-20,652,839 | - | C2H4g02603 | CX4g036319 | LOC_Os04g39770 | Os04g0473800 | FCP1, FCP1/OsCLE402, Os CLE402, OsCLE402 | Detail |
| C1H4g00302 | 4:20,658,721-20,668,640 | - | C2H4g23069 | CX4g034400 | LOC_Os04g39780 | Os04g0473900 | DWA1 | Detail |
| C1H4g22436 | 4:20,685,532-20,686,945 | - | C2H4g27268 | - | LOC_Os04g39864 | Os04g0474500 | - | Detail |
| C1H4g30851 | 4:20,689,258-20,690,068 | - | C2H4g08296 | - | LOC_Os04g39840 | Os04g0474300 | - | Detail |
| C1H4g08294 | 4:20,693,208-20,698,478 | - | C2H4g06810 | - | LOC_Os04g39840 | Os04g0474500 | - | Detail |
| C1H4g25243 | 4:20,700,221-20,708,124 | - | C2H4g06498 | - | LOC_Os04g39864 | Os04g0474500 | - | Detail |
| C1H4g24332 | 4:20,711,314-20,716,411 | - | C2H4g26901 | - | LOC_Os04g39880 | Os04g0474800 | OsTAGG2, Os4BGlu12 | Detail |
| C1H4g03925 | 4:20,722,945-20,728,104 | - | C2H4g06549 | - | LOC_Os04g39900 | Os04g0474900 | OsTAGG1, Os4BGlu13 | Detail |
| C1H4g27571 | 4:20,730,737-20,733,148 | + | C2H4g15875 | CX4g031592 | LOC_Os04g39910 | Os04g0475100 | SDRLK-61 | Detail |
| C1H4g19181 | 4:20,737,041-20,739,449 | + | C2H4g18216 | CX4g034833 | LOC_Os04g39930 | Os04g0475200 | SDRLK-62 | Detail |
| C1H4g08744 | 4:20,740,948-20,743,475 | + | C2H4g26452 | CX4g033183 | LOC_Os04g39940 | Os04g0475250 | - | Detail |
| C1H4g16959 | 4:20,746,009-20,746,536 | - | C2H4g17863 | CX4g035822 | LOC_Os04g39950 | Os04g0475300 | - | Detail |
| C1H4g29172 | 4:20,749,146-20,750,381 | - | C2H4g05329 | CX4g033449 | LOC_Os04g39970 | Os04g0475500 | OsV4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g25567 | 5:20,359,445-20,359,684 | - | C1H5g28707 | CX5g036882 | LOC_Os05g41230 | Os05g0491400 | - | Detail |
| C2H5g09584 | 5:20,362,326-20,366,465 | - | C1H5g10854 | CX5g037471 | LOC_Os05g41240 | Os05g0491500 | - | Detail |
| C2H5g22106 | 5:20,380,352-20,380,918 | - | C1H5g20980 | CX5g038007 | LOC_Os05g41250 | Os05g0491700 | - | Detail |
| C2H5g21965 | 5:20,384,267-20,386,573 | - | C1H5g30902 | CX5g040451 | LOC_Os05g41270 | Os05g0491900 | OsCPK14 | Detail |
| C2H5g13147 | 5:20,388,983-20,390,881 | + | C1H5g29542 | CX5g040832 | LOC_Os05g41280 | Os05g0492000 | - | Detail |
| C2H5g02635 | 5:20,394,582-20,397,956 | + | C1H5g27219 | CX5g040156 | LOC_Os05g41290 | Os05g0492200 | - | Detail |
| C2H5g19061 | 5:20,400,819-20,404,184 | + | C1H5g10780 | CX5g038782 | LOC_Os05g41310 | Os05g0492600 | - | Detail |
| C2H5g12811 | 5:20,400,939-20,402,394 | - | C1H5g24473 | - | - | Os05g0492500 | - | Detail |
| C2H5g05724 | 5:20,409,856-20,414,427 | - | C1H5g26798 | CX5g041141 | LOC_Os05g40730 | - | - | Detail |
| C2H5g11046 | 5:20,415,551-20,419,357 | - | C1H11g28267 | CX5g037637 | LOC_Os04g43110 | - | - | Detail |
| C2H5g11926 | 5:20,422,822-20,425,987 | + | C1H5g03494 | CX5g041000 | LOC_Os05g41370 | Os05g0493100 | - | Detail |
| C2H5g17631 | 5:20,426,423-20,426,999 | + | C1H5g03494 | CX5g041000 | LOC_Os05g41370 | Os05g0493100 | - | Detail |
| C2H5g00500 | 5:20,432,864-20,435,990 | + | C1H5g10631 | CX5g037871 | LOC_Os05g41390 | Os05g0493500 | - | Detail |
| C2H5g02711 | 5:20,439,573-20,441,038 | - | C1H5g02448 | CX5g037681 | LOC_Os05g41400 | Os05g0493600 | - | Detail |
| C2H5g25483 | 5:20,450,765-20,452,694 | + | C1H5g24117 | CX5g039492 | LOC_Os05g41420 | Os05g0493800 | - | Detail |
| C2H5g27070 | 5:20,457,034-20,457,767 | + | C1H5g19870 | - | - | - | - | Detail |
| C2H5g27840 | 5:20,461,954-20,466,022 | + | C1H5g15971 | CX5g037576 | LOC_Os05g41440 | Os05g0494000 | OsC3'H1, CYP98A4 | Detail |
| C2H5g22696 | 5:20,467,521-20,471,512 | + | C1H5g14365 | CX5g040207 | LOC_Os05g41450 | Os05g0494100 | DRAP2, OsDrAp2, OsHAPL1 | Detail |
| C2H5g26776 | 5:20,472,374-20,472,928 | - | C1H5g30644 | CX5g039984 | LOC_Os05g41460 | Os05g0494200 | OC-II, OC-III | Detail |
| C2H5g13599 | 5:20,478,917-20,479,984 | + | C1H5g25577 | CX5g039879 | LOC_Os05g41480 | Os05g0494500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |