| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23173 | 4:20,134,233-20,137,730 | + | C2H4g15046 | CX4g031560 | LOC_Os04g38870 | Os04g0462500 | - | Detail |
| C1H4g05269 | 4:20,138,431-20,140,481 | - | C2H4g09025 | CX4g033001 | LOC_Os04g38880 | Os04g0462600 | - | Detail |
| C1H4g30627 | 4:20,146,849-20,147,703 | - | C2H4g27908 | CX4g034025 | LOC_Os04g38900 | Os04g0462900 | - | Detail |
| C1H4g28569 | 4:20,149,829-20,152,398 | - | C2H4g10984 | CX4g032418 | LOC_Os04g38910 | Os04g0463000 | - | Detail |
| C1H4g14030 | 4:20,158,006-20,158,918 | - | - | - | - | - | - | Detail |
| C1H4g28377 | 4:20,163,434-20,164,307 | - | C2H4g23255 | CX4g034571 | LOC_Os09g23300 | Os04g0463400 | OsVIT1;2 OsVIT1 | Detail |
| C1H4g31445 | 4:20,165,453-20,165,896 | - | C2H4g07912 | CX4g034571 | LOC_Os04g38940 | Os04g0463400 | OsVIT1;2 OsVIT1 | Detail |
| C1H4g09561 | 4:20,169,229-20,172,624 | - | C2H4g28763 | CX4g036538 | LOC_Os04g38950 | Os04g0463500 | TDD1, OASB1 | Detail |
| C1H4g11967 | 4:20,174,541-20,177,039 | + | C2H4g28177 | CX4g033159 | LOC_Os04g38960 | Os04g0463600 | - | Detail |
| C1H4g05080 | 4:20,179,690-20,181,500 | - | C2H4g13162 | CX4g033067 | LOC_Os04g38970 | Os04g0463700 | - | Detail |
| C1H4g02516 | 4:20,181,910-20,188,388 | - | C2H4g07932 | CX4g036672 | LOC_Os04g38980 | Os04g0463800 | - | Detail |
| C1H4g21091 | 4:20,199,235-20,199,681 | - | - | - | - | - | - | Detail |
| C1H4g01794 | 4:20,200,816-20,205,566 | - | C2H4g13985 | CX4g032487 | LOC_Os04g39020 | Os04g0464200 | BAD1, Badh1, badh1, BAD1, BADH1, OsBADH1, BADH | Detail |
| C1H4g07451 | 4:20,208,347-20,212,309 | - | C2H4g00984 | CX4g035491 | LOC_Os04g39030 | Os04g0464400 | - | Detail |
| C1H4g23214 | 4:20,215,020-20,219,987 | + | C2H4g04170 | CX4g031502 | LOC_Os04g39040 | Os04g0464500 | - | Detail |
| C1H4g17346 | 4:20,223,164-20,223,448 | - | C2H4g17707 | - | - | - | - | Detail |
| C1H4g20578 | 4:20,230,246-20,230,536 | - | C2H4g26653 | CX4g036034 | - | - | - | Detail |
| C1H4g22118 | 4:20,242,943-20,249,032 | - | C2H4g00542 | CX4g035608 | LOC_Os04g39060 | Os04g0464800 | OsCFM2 | Detail |
| C1H4g16307 | 4:20,253,424-20,254,077 | - | C2H4g07256 | - | - | Os07g0567801 | - | Detail |
| C1H4g10402 | 4:20,258,867-20,259,130 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19977 | 3:28,640,498-28,645,790 | + | C1H3g03734 | CX3g028780 | LOC_Os03g55100 | Os03g0758300 | OsCNGC14 | Detail |
| C2H3g18083 | 3:28,647,615-28,650,626 | + | C1H3g12190 | CX3g025340 | LOC_Os03g55110 | Os03g0758400 | - | Detail |
| C2H3g16234 | 3:28,653,088-28,653,723 | - | C1H3g12511 | CX3g025542 | LOC_Os03g55120 | Os03g0758500 | - | Detail |
| C2H3g10389 | 3:28,668,718-28,675,374 | + | C1H3g28552 | CX3g030315 | LOC_Os03g55130 | Os03g0758600 | - | Detail |
| C2H3g16550 | 3:28,676,078-28,680,557 | + | C1H3g29486 | CX3g029765 | LOC_Os03g55140 | Os03g0758700 | - | Detail |
| C2H3g15196 | 3:28,682,577-28,684,823 | + | C1H3g11985 | CX3g027861 | LOC_Os03g55150 | Os03g0758800 | OseIF5A-2 | Detail |
| C2H3g06066 | 3:28,685,534-28,688,468 | + | C1H3g25907 | CX3g030192 | LOC_Os03g55164 | Os03g0758900 | - | Detail |
| C2H3g18373 | 3:28,689,779-28,690,405 | + | C1H3g02522 | CX3g030258 | LOC_Os03g55164 | Os03g0758950 | OsWRKY4 | Detail |
| C2H3g20753 | 3:28,690,463-28,693,207 | + | C1H3g14505 | CX3g030258 | LOC_Os03g55164 | Os03g0758950 | OsWRKY4 | Detail |
| C2H3g12552 | 3:28,693,737-28,696,769 | - | C1H3g16488 | CX3g028552 | LOC_Os03g55180 | Os03g0759000 | - | Detail |
| C2H3g13001 | 3:28,703,247-28,705,175 | + | C1H3g23489 | CX3g026932 | LOC_Os03g55200 | Os03g0759500 | OsORC5 | Detail |
| C2H3g21370 | 3:28,715,870-28,720,301 | + | C1H3g02617 | CX3g030027 | LOC_Os03g55220 | Os03g0759700 | - | Detail |
| C2H3g27540 | 3:28,734,184-28,735,038 | + | C1H3g22708 | CX3g027892 | LOC_Os03g55230 | Os03g0760000 | - | Detail |
| C2H3g20624 | 3:28,739,877-28,743,239 | + | C1H3g12152 | CX3g030489 | LOC_Os03g55240 | Os03g0760200 | Bel, CYP81A6 | Detail |
| C2H3g09774 | 3:28,745,254-28,747,651 | + | C1H3g10305 | CX3g026015 | LOC_Os03g55250 | Os03g0760300 | - | Detail |
| C2H3g11478 | 3:28,749,351-28,752,939 | + | C1H3g04584 | CX3g029417 | LOC_Os03g55260 | Os03g0760500 | - | Detail |
| C2H3g24493 | 3:28,753,411-28,756,373 | - | C1H3g09452 | CX3g029986 | LOC_Os03g55270 | Os03g0760600 | - | Detail |
| C2H3g08027 | 3:28,759,062-28,762,295 | + | C1H3g27656 | CX3g030209 | LOC_Os03g55280 | Os03g0760700 | - | Detail |
| C2H3g21109 | 3:28,763,895-28,764,282 | - | C1H3g11879 | CX3g027262 | LOC_Os03g55290 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C2H3g17978 | 3:28,767,770-28,769,312 | - | C1H3g27713 | CX3g026450 | LOC_Os03g55310 | Os03g0761000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |