| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g09842 | 4:19,965,873-19,967,760 | + | C2H4g10950 | CX4g031630 | LOC_Os04g38600 | Os04g0459500 | - | Detail |
| C1H4g22419 | 4:19,968,451-19,970,778 | - | C2H4g21093 | CX4g035534 | LOC_Os04g38610 | Os04g0459600 | - | Detail |
| C1H4g02624 | 4:19,972,528-19,975,843 | - | C2H4g29769 | CX4g031435 | LOC_Os04g38620 | Os04g0459700 | - | Detail |
| C1H4g06613 | 4:19,981,869-19,985,349 | - | C2H4g23801 | CX4g032546 | LOC_Os04g38630 | Os04g0459800 | - | Detail |
| C1H4g08376 | 4:19,988,929-19,994,340 | + | C2H4g04441 | CX4g034165 | LOC_Os04g38640 | Os04g0459900 | - | Detail |
| C1H4g19139 | 4:20,001,646-20,003,575 | + | C2H4g25768 | CX4g035386 | LOC_Os04g38670 | Os04g0460200 | OsATL14, Bh4 | Detail |
| C1H4g00598 | 4:20,019,678-20,021,871 | + | C2H4g01029 | CX4g036106 | LOC_Os04g38680 | Os04g0460300 | - | Detail |
| C1H4g20972 | 4:20,026,350-20,027,141 | + | C2H4g15731 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C1H4g26714 | 4:20,029,626-20,032,112 | + | C2H4g29420 | CX4g035215 | LOC_Os04g38700 | Os04g0460500 | - | Detail |
| C1H4g00856 | 4:20,038,253-20,039,873 | + | C2H4g09182 | CX4g035794 | LOC_Os04g38720 | Os04g0460600 | NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2 | Detail |
| C1H4g10275 | 4:20,046,098-20,049,027 | - | C2H4g21139 | CX4g031747 | LOC_Os04g38730 | - | - | Detail |
| C1H4g16192 | 4:20,070,094-20,073,348 | + | C2H4g04335 | CX4g033056 | LOC_Os04g38740 | Os04g0461000 | Os2R_MYB43 | Detail |
| C1H4g01178 | 4:20,073,898-20,075,514 | + | C2H4g17531 | CX4g035604 | LOC_Os04g38750 | Os04g0461100 | - | Detail |
| C1H4g10260 | 4:20,086,206-20,094,834 | + | C2H4g02198 | CX4g035338 | LOC_Os04g38770 | Os04g0461300 | - | Detail |
| C1H4g16630 | 4:20,087,292-20,103,395 | - | C2H4g30121 | - | - | - | - | Detail |
| C1H4g09833 | 4:20,107,659-20,108,803 | - | C2H4g15152 | CX4g032154 | - | Os04g0461600 | - | Detail |
| C1H4g11139 | 4:20,114,503-20,117,717 | - | C2H4g04073 | CX4g033096 | LOC_Os04g38810 | Os04g0461800 | - | Detail |
| C1H4g20046 | 4:20,119,778-20,126,787 | - | C2H4g14143 | CX4g035671 | LOC_Os04g38850 | Os04g0462300 | - | Detail |
| C1H4g28167 | 4:20,124,184-20,124,561 | + | C2H4g25655 | CX4g034495 | LOC_Os04g38840 | Os04g0462200 | - | Detail |
| C1H4g07343 | 4:20,127,971-20,130,002 | - | C2H4g21045 | CX4g031760 | LOC_Os04g38860 | Os04g0462400 | OsLHT4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05227 | 3:32,575,990-32,580,536 | + | C1H3g06021 | CX3g029436 | LOC_Os03g63310 | Os03g0850200 | - | Detail |
| C2H3g17725 | 3:32,589,559-32,594,855 | + | C1H3g11487 | CX3g025643 | LOC_Os03g63330 | Os03g0850400 | - | Detail |
| C2H3g10229 | 3:32,599,342-32,600,742 | - | C1H3g23900 | CX3g025502 | LOC_Os03g63360 | Os03g0850600 | - | Detail |
| C2H3g07946 | 3:32,601,789-32,604,702 | - | C1H3g06173 | CX3g027337 | LOC_Os03g63370 | Os03g0850700 | - | Detail |
| C2H3g04851 | 3:32,608,665-32,610,652 | - | C1H3g01400 | CX3g027803 | LOC_Os03g63380 | Os03g0850800 | - | Detail |
| C2H3g19999 | 3:32,611,956-32,614,726 | + | C1H3g21756 | CX3g028883 | LOC_Os03g63400 | Os03g0851000 | - | Detail |
| C2H3g27399 | 3:32,617,185-32,620,934 | - | C1H3g04311 | CX3g025511 | LOC_Os03g63410 | Os03g0851100 | - | Detail |
| C2H3g28237 | 3:32,621,151-32,621,630 | + | C1H3g03955 | CX3g029854 | LOC_Os03g63420 | Os03g0851200 | - | Detail |
| C2H3g01754 | 3:32,623,518-32,627,549 | - | C1H3g18156 | CX3g027614 | LOC_Os03g63430 | Os03g0851300 | - | Detail |
| C2H3g16528 | 3:32,630,489-32,638,736 | + | C1H3g10494 | CX3g026223 | LOC_Os03g63440 | Os03g0851400 | - | Detail |
| C2H3g13556 | 3:32,639,716-32,644,857 | + | C1H3g11947 | CX3g028446 | LOC_Os03g63470 | Os03g0851600 | - | Detail |
| C2H3g27557 | 3:32,645,813-32,648,267 | + | C1H3g29898 | CX3g028446 | LOC_Os03g63480 | Os03g0851700 | Xbos251, XBOS251 | Detail |
| C2H3g08313 | 3:32,649,013-32,651,309 | + | C1H3g20484 | CX3g030221 | LOC_Os03g63490 | Os03g0851800 | - | Detail |
| C2H3g19287 | 3:32,652,490-32,658,988 | - | C1H3g03202 | CX3g031225 | LOC_Os03g63500 | Os03g0851900 | - | Detail |
| C2H3g14849 | 3:32,664,058-32,664,622 | - | C1H3g01639 | CX3g024991 | - | - | - | Detail |
| C2H3g22448 | 3:32,670,873-32,675,183 | - | C1H3g16711 | CX3g029990 | LOC_Os03g63520 | Os03g0852200 | - | Detail |
| C2H3g22869 | 3:32,677,995-32,680,871 | + | C1H3g08912 | CX3g027065 | LOC_Os03g63530 | Os03g0852300 | - | Detail |
| C2H3g22131 | 3:32,684,822-32,686,437 | - | C1H3g05162 | - | LOC_Os03g63550 | Os03g0852500 | - | Detail |
| C2H3g11356 | 3:32,687,020-32,688,191 | + | C1H3g10475 | CX3g031065 | LOC_Os03g63554 | Os03g0852600 | - | Detail |
| C2H3g06256 | 3:32,695,811-32,698,824 | - | C1H3g26435 | CX3g031167 | LOC_Os03g63590 | Os03g0852900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |