| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05899 | 4:19,442,945-19,451,024 | - | C2H4g09803 | CX4g032791 | LOC_Os04g36840 | Os04g0446100 | - | Detail |
| C1H4g05743 | 4:19,445,437-19,447,490 | + | C2H4g15595 | CX4g032205 | LOC_Os04g36830 | Os04g0446000 | - | Detail |
| C1H4g24606 | 4:19,450,912-19,451,161 | + | - | - | - | - | - | Detail |
| C1H4g25812 | 4:19,453,981-19,456,123 | + | C2H4g00123 | CX4g035934 | LOC_Os04g36850 | Os04g0446200 | - | Detail |
| C1H4g22842 | 4:19,457,182-19,459,281 | - | C2H4g15373 | CX4g033038 | LOC_Os04g36859 | Os04g0446300 | - | Detail |
| C1H4g27541 | 4:19,459,489-19,460,166 | - | C2H4g15373 | CX4g033038 | LOC_Os04g36859 | Os04g0446300 | - | Detail |
| C1H4g22191 | 4:19,464,710-19,465,290 | + | - | - | - | - | - | Detail |
| C1H4g15722 | 4:19,466,256-19,470,204 | + | C2H4g05616 | CX4g034836 | LOC_Os04g36890 | Os04g0446500 | - | Detail |
| C1H4g29772 | 4:19,473,671-19,475,637 | - | C2H4g24683 | CX4g032071 | LOC_Os04g36910 | Os04g0651600 | - | Detail |
| C1H4g12606 | 4:19,475,957-19,476,385 | + | - | - | - | - | - | Detail |
| C1H4g24047 | 4:19,478,198-19,480,018 | + | C2H4g15235 | CX4g031740 | LOC_Os04g39000 | Os04g0477200 | - | Detail |
| C1H4g31241 | 4:19,511,669-19,515,682 | + | C2H4g17395 | CX4g035903 | LOC_Os04g37430 | Os04g0447100 | SPH | Detail |
| C1H4g28115 | 4:19,518,216-19,520,105 | - | C2H4g08055 | CX4g032826 | LOC_Os04g37460 | Os04g0447400 | - | Detail |
| C1H4g16514 | 4:19,520,569-19,523,135 | + | C2H4g00082 | CX4g036423 | LOC_Os04g37470 | Os04g0447500 | - | Detail |
| C1H4g20692 | 4:19,523,821-19,527,753 | + | C2H4g04455 | CX4g031955 | LOC_Os04g37480 | Os04g0447600 | - | Detail |
| C1H4g16860 | 4:19,528,249-19,530,767 | + | C2H4g06514 | CX4g034192 | LOC_Os04g37490 | Os04g0447700 | - | Detail |
| C1H4g11216 | 4:19,533,110-19,534,502 | + | C2H4g00146 | CX4g036084 | LOC_Os04g37500 | Os04g0447800 | OsGAD2 | Detail |
| C1H4g10412 | 4:19,535,948-19,536,415 | + | C2H4g10663 | CX4g035240 | LOC_Os04g37500 | Os04g0447800 | OsGAD2 | Detail |
| C1H4g15297 | 4:19,539,159-19,540,991 | + | C2H4g26971 | CX4g032313 | LOC_Os04g37520 | Os04g0448000 | - | Detail |
| C1H4g11503 | 4:19,544,921-19,550,699 | + | C2H4g24483 | CX4g034328 | LOC_Os04g37540 | Os04g0448200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g08088 | 1:23,044,591-23,047,367 | + | C1H1g31055 | CX1g002458 | LOC_Os01g45350 | Os01g0640600 | - | Detail |
| C2H1g22980 | 1:23,046,848-23,048,906 | - | C1H1g10058 | CX1g004617 | LOC_Os01g45360 | Os01g0640700 | - | Detail |
| C2H1g13504 | 1:23,051,648-23,054,849 | - | C1H1g19962 | CX1g003997 | LOC_Os01g45370 | Os01g0640800 | - | Detail |
| C2H1g09207 | 1:23,055,650-23,059,742 | + | C1H1g17185 | CX1g000116 | LOC_Os01g45380 | Os01g0641000 | - | Detail |
| C2H1g17482 | 1:23,061,086-23,064,129 | + | C1H1g25061 | CX1g004780 | LOC_Os01g45390 | Os01g0641100 | - | Detail |
| C2H1g02385 | 1:23,078,541-23,081,482 | - | C1H1g31552 | CX1g004195 | LOC_Os01g45439 | Os01g0641700 | - | Detail |
| C2H1g03402 | 1:23,086,625-23,088,923 | + | C1H1g00902 | CX1g003051 | LOC_Os01g45450 | Os01g0641800 | - | Detail |
| C2H1g07647 | 1:23,090,833-23,091,147 | + | C1H1g12918 | CX1g005344 | LOC_Os01g45460 | Os01g0642000 | - | Detail |
| C2H1g14331 | 1:23,091,174-23,098,582 | + | C1H1g12918 | CX1g005344 | LOC_Os01g45460 | Os01g0642100 | - | Detail |
| C2H1g23910 | 1:23,098,762-23,099,498 | - | C1H1g06064 | - | LOC_Os01g45470 | Os01g0642200 | - | Detail |
| C2H1g05902 | 1:23,132,843-23,134,398 | + | C1H1g02209 | CX1g000192 | LOC_Os01g45520 | Os01g0642801 | - | Detail |
| C2H1g10748 | 1:23,134,990-23,137,497 | - | C1H1g26078 | CX1g001242 | LOC_Os01g45530 | Os01g0642900 | - | Detail |
| C2H1g09079 | 1:23,137,588-23,138,064 | - | C1H1g26078 | CX1g001242 | LOC_Os01g45530 | Os01g0642900 | - | Detail |
| C2H1g05185 | 1:23,155,106-23,159,500 | + | C1H1g21876 | CX1g003646 | LOC_Os01g45550 | Os01g0643300 | - | Detail |
| C2H1g02636 | 1:23,170,308-23,173,345 | - | C1H1g25133 | CX1g003628 | LOC_Os01g45570 | Os01g0643600 | SGD2, OsHOX3, SGD2/OsHOX3 | Detail |
| C2H1g17274 | 1:23,188,624-23,193,473 | - | C1H1g17824 | CX1g005269 | LOC_Os01g45620 | Os01g0643800 | - | Detail |
| C2H1g01755 | 1:23,197,092-23,198,684 | + | C1H1g14596 | CX1g004663 | LOC_Os01g45640 | Os01g0644000 | - | Detail |
| C2H1g00660 | 1:23,216,768-23,217,823 | - | C1H1g08154 | CX1g003016 | LOC_Os01g45730 | Os01g0645000 | - | Detail |
| C2H1g06994 | 1:23,226,508-23,233,386 | + | C1H1g06404 | CX1g001972 | LOC_Os01g45750 | Os01g0645200 | - | Detail |
| C2H1g23683 | 1:23,246,717-23,248,981 | + | C1H1g20018 | CX1g005018 | LOC_Os01g45760 | Os01g0645400 | YUCCA1, OsYUCCA1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |