| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01467 | 1:20,128,662-20,130,041 | + | C2H1g07845 | CX1g003139 | LOC_Os01g39790 | Os01g0579900 | - | Detail |
| C1H1g21549 | 1:20,132,981-20,135,917 | - | C2H1g09319 | CX1g000391 | LOC_Os01g39800 | Os01g0580000 | - | Detail |
| C1H1g25713 | 1:20,137,593-20,143,306 | + | C2H1g11799 | CX1g006764 | LOC_Os01g39810 | Os01g0580100 | - | Detail |
| C1H1g21126 | 1:20,153,886-20,159,904 | + | C2H1g14347 | CX1g007091 | LOC_Os01g39830 | Os01g0580200 | - | Detail |
| C1H1g08752 | 1:20,174,783-20,176,028 | + | C2H1g10202 | CX1g001278 | LOC_Os01g39860 | Os01g0580500 | ACO7, OsACO7 | Detail |
| C1H1g22394 | 1:20,179,308-20,184,928 | - | C2H1g22352 | CX1g003562 | LOC_Os01g39890 | Os01g0580800 | - | Detail |
| C1H1g15496 | 1:20,203,430-20,207,433 | + | C2H1g01027 | CX1g003223 | LOC_Os01g39960 | Os01g0581300 | OsLCYe | Detail |
| C1H1g29026 | 1:20,207,976-20,210,678 | + | C2H1g16645 | CX1g001920 | LOC_Os01g39970 | Os01g0581400 | - | Detail |
| C1H1g11792 | 1:20,221,163-20,224,476 | - | C2H1g06478 | CX1g003587 | LOC_Os01g40000 | Os01g0581900 | - | Detail |
| C1H1g19435 | 1:20,250,036-20,254,956 | - | C2H1g21784 | CX1g000670 | LOC_Os01g40050 | Os01g0582400 | - | Detail |
| C1H1g00267 | 1:20,260,116-20,263,371 | + | C2H1g22424 | CX1g004564 | - | - | - | Detail |
| C1H1g12353 | 1:20,282,301-20,288,197 | + | C2H1g13531 | CX1g007125 | LOC_Os01g40094 | Os01g0583100 | - | Detail |
| C1H1g01246 | 1:20,289,721-20,292,468 | - | C2H1g19309 | CX1g005917 | LOC_Os01g40110 | Os01g0583200 | - | Detail |
| C1H1g08692 | 1:20,303,566-20,309,033 | + | C2H1g01103 | CX1g005537 | LOC_Os01g40150 | Os01g0583700 | - | Detail |
| C1H1g16691 | 1:20,314,732-20,315,400 | + | C2H1g12153 | - | LOC_Os01g40170 | Os01g0583900 | - | Detail |
| C1H1g06868 | 1:20,321,392-20,325,171 | + | C2H1g12153 | CX1g005854 | LOC_Os01g40170 | Os01g0583900 | - | Detail |
| C1H1g22381 | 1:20,343,513-20,348,138 | - | C2H1g20455 | CX1g005795 | LOC_Os01g40200 | Os01g0584200 | - | Detail |
| C1H1g29279 | 1:20,351,809-20,352,195 | + | C2H1g06413 | CX1g002664 | LOC_Os01g40220 | - | - | Detail |
| C1H1g13029 | 1:20,357,434-20,375,761 | + | C2H1g09575 | CX1g003373 | LOC_Os01g40250 | Os01g0584800 | - | Detail |
| C1H1g07481 | 1:20,379,086-20,380,030 | + | C2H1g22147 | CX1g004043 | LOC_Os01g40260 | Os01g0584900 | OsWRKY77 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25229 | 4:15,794,678-15,801,442 | + | C1H4g16826 | CX4g032461 | LOC_Os04g31330 | Os04g0382200 | EXO70F3, OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3 | Detail |
| C2H4g08291 | 4:15,804,992-15,811,254 | - | C1H4g08250 | CX4g033731 | LOC_Os04g31340 | Os04g0382300 | - | Detail |
| C2H4g21907 | 4:15,824,605-15,830,076 | + | C1H4g23640 | CX4g033213 | LOC_Os04g31390 | Os04g0382700 | - | Detail |
| C2H4g11523 | 4:15,836,091-15,839,486 | + | C1H4g29507 | CX4g031504 | LOC_Os04g31400 | Os04g0382800 | - | Detail |
| C2H4g17370 | 4:15,913,333-15,914,224 | + | - | - | - | - | - | Detail |
| C2H4g25485 | 4:15,931,863-15,933,250 | - | C1H4g27689 | CX4g031500 | LOC_Os04g31610 | Os04g0385600 | - | Detail |
| C2H4g09951 | 4:15,993,743-15,994,288 | + | C1H4g28157 | CX4g036232 | LOC_Os04g31670 | Os04g0386300 | - | Detail |
| C2H4g19704 | 4:16,003,534-16,005,941 | + | C1H4g01776 | CX4g034133 | LOC_Os04g31690 | Os04g0386500 | - | Detail |
| C2H4g09573 | 4:16,006,671-16,011,720 | - | C1H4g26815 | CX4g031487 | LOC_Os04g31700 | Os04g0386600 | - | Detail |
| C2H4g14766 | 4:16,012,438-16,013,706 | + | C1H4g21589 | CX4g036353 | LOC_Os04g31710 | Os04g0386700 | - | Detail |
| C2H4g24192 | 4:16,016,241-16,016,962 | - | C1H4g05500 | CX4g032722 | LOC_Os04g31730 | Os04g0386900 | - | Detail |
| C2H4g21209 | 4:16,039,785-16,039,997 | + | C1H4g13044 | CX4g034278 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| C2H4g17117 | 4:16,052,858-16,056,057 | + | C1H4g13813 | CX4g031777 | LOC_Os04g31790 | Os04g0387300 | - | Detail |
| C2H4g01397 | 4:16,061,878-16,080,060 | + | C1H4g20734 | CX4g031777 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| C2H4g11321 | 4:16,090,868-16,092,505 | + | C1H4g27855 | CX4g036291 | LOC_Os04g31880 | Os04g0388000 | - | Detail |
| C2H4g19348 | 4:16,122,233-16,129,901 | + | C1H4g11099 | CX4g033923 | LOC_Os04g31900 | Os04g0388500 | - | Detail |
| C2H4g18326 | 4:16,130,559-16,133,214 | - | C1H4g07543 | CX4g035641 | LOC_Os04g31910 | Os04g0388601 | - | Detail |
| C2H4g10433 | 4:16,140,780-16,145,134 | + | C1H4g09954 | CX4g031743 | LOC_Os04g31924 | Os04g0388700 | - | Detail |
| C2H4g06056 | 4:16,147,299-16,150,489 | + | C1H4g09321 | CX4g034542 | LOC_Os04g31940 | Os04g0388800 | - | Detail |
| C2H4g16596 | 4:16,152,682-16,155,851 | - | C1H4g17922 | CX4g034481 | LOC_Os04g31950 | Os04g0388900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |