| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g16855 | 4:18,676,712-18,677,694 | + | - | - | - | - | - | Detail |
| C1H4g18234 | 4:18,684,669-18,689,690 | + | C2H4g22168 | CX4g032398 | LOC_Os04g35380 | Os04g0433200 | - | Detail |
| C1H4g24371 | 4:18,697,153-18,697,812 | + | C2H4g19405 | CX4g032298 | LOC_Os04g35390 | Os04g0433300 | - | Detail |
| C1H4g19013 | 4:18,706,367-18,709,203 | + | C2H4g13084 | CX4g033941 | - | - | - | Detail |
| C1H4g13330 | 4:18,712,494-18,715,903 | + | C2H4g28789 | - | LOC_Os04g51490 | Os04g0132900 | - | Detail |
| C1H4g04051 | 4:18,723,790-18,728,035 | - | C2H4g19627 | CX4g033528 | LOC_Os04g35410 | Os04g0433600 | - | Detail |
| C1H4g09671 | 4:18,731,134-18,740,412 | - | C2H4g01376 | CX4g032013 | LOC_Os04g35420 | Os04g0433800 | OsRecQl4 | Detail |
| C1H4g26209 | 4:18,742,389-18,748,868 | - | C2H4g24266 | CX4g032480 | LOC_Os04g35430 | Os04g0433900 | - | Detail |
| C1H4g16755 | 4:18,759,922-18,763,703 | - | C2H4g14516 | CX4g036182 | LOC_Os04g35480 | Os04g0434300 | - | Detail |
| C1H4g01137 | 4:18,763,984-18,765,686 | + | C2H4g03670 | CX4g033477 | LOC_Os04g35490 | Os04g0434400 | - | Detail |
| C1H4g18837 | 4:18,780,963-18,792,103 | - | C2H4g12666 | CX4g033597 | LOC_Os04g35510 | Os04g0434600 | - | Detail |
| C1H4g16208 | 4:18,794,268-18,798,883 | - | C2H4g00913 | CX4g035656 | LOC_Os04g35520 | Os04g0434800 | OsAPX7, sAPX | Detail |
| C1H4g09329 | 4:18,802,216-18,803,580 | + | C2H4g20243 | CX4g035680 | LOC_Os04g35530 | Os04g0434900 | - | Detail |
| C1H4g19761 | 4:18,810,258-18,815,117 | + | C2H4g06857 | CX4g036436 | LOC_Os04g35540 | Os04g0435100 | - | Detail |
| C1H4g06341 | 4:18,826,650-18,826,940 | - | C2H2g20826 | CX11g013683 | - | - | - | Detail |
| C1H4g07963 | 4:18,832,271-18,832,572 | + | - | CX4g034999 | - | - | - | Detail |
| C1H4g18209 | 4:18,839,895-18,842,170 | - | C2H4g24818 | CX4g032696 | LOC_Os04g35560 | Os04g0435500 | - | Detail |
| C1H4g19177 | 4:18,854,300-18,859,728 | + | C2H4g14359 | CX4g035624 | LOC_Os04g35570 | Os04g0435700 | - | Detail |
| C1H4g12800 | 4:18,867,887-18,871,394 | - | C2H4g11818 | CX4g033235 | LOC_Os04g35590 | Os04g0436100 | OsACOT | Detail |
| C1H4g13941 | 4:18,873,267-18,875,907 | - | C2H4g10059 | CX4g035055 | LOC_Os04g35600 | Os04g0436300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g22870 | 1:4,587,065-4,587,664 | - | C1H1g28329 | CX1g000104 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| C2H1g12871 | 1:4,589,682-4,591,118 | + | C1H1g05499 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C2H1g28373 | 1:4,605,875-4,613,282 | + | C1H1g14618 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| C2H1g18174 | 1:4,615,122-4,620,409 | - | C1H1g20387 | CX1g005780 | LOC_Os01g10050 | Os01g0197200 | - | Detail |
| C2H1g08298 | 1:4,623,015-4,623,565 | + | - | CX1g005103 | LOC_Os01g10070 | Os01g0197350 | - | Detail |
| C2H1g17197 | 1:4,624,739-4,627,138 | + | C1H1g24747 | CX1g005121 | LOC_Os01g10080 | Os01g0197400 | - | Detail |
| C2H1g01272 | 1:4,627,592-4,629,505 | - | C1H1g01968 | CX1g004435 | LOC_Os01g10090 | Os01g0197450 | - | Detail |
| C2H1g12602 | 1:4,630,262-4,632,510 | - | C1H1g23699 | CX1g002532 | LOC_Os01g10100 | Os01g0197500 | - | Detail |
| C2H1g29964 | 1:4,638,301-4,642,740 | - | C1H1g02388 | CX1g000181 | LOC_Os01g10110 | Os01g0197700 | Gn1a, OsCKX2 | Detail |
| C2H1g10405 | 1:4,651,798-4,653,068 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10130 | Os01g0197900 | OsRDR3 | Detail |
| C2H1g14250 | 1:4,653,235-4,665,018 | - | C1H1g16458 | CX1g006534 | - | Os01g0197900 | OsRDR3 | Detail |
| C2H1g22382 | 1:4,665,514-4,666,916 | - | C1H1g16458 | CX1g006534 | - | Os01g0197900 | OsRDR3 | Detail |
| C2H1g06287 | 1:4,668,151-4,669,334 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10140 | Os01g0198000 | OsRDR4 | Detail |
| C2H1g09190 | 1:4,669,519-4,679,023 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10140 | Os01g0198000 | OsRDR4 | Detail |
| C2H1g16198 | 1:4,679,850-4,683,835 | - | C1H1g16458 | CX1g006534 | - | Os01g0198000 | OsRDR4 | Detail |
| C2H1g26620 | 1:4,688,816-4,695,355 | - | C1H1g16973 | CX1g001693 | LOC_Os01g10150 | Os01g0198200 | - | Detail |
| C2H1g23718 | 1:4,705,402-4,706,118 | - | C1H1g29548 | CX1g002926 | LOC_Os01g10180 | Os01g0198500 | - | Detail |
| C2H1g20955 | 1:4,726,171-4,726,818 | + | - | CX1g000304 | LOC_Os01g10210 | Os01g0198900 | - | Detail |
| C2H1g09712 | 1:4,734,659-4,735,255 | + | - | CX1g000572 | LOC_Os01g10230 | Os01g0199300 | - | Detail |
| C2H1g26709 | 1:4,738,822-4,743,043 | - | C1H1g25179 | CX1g006691 | LOC_Os01g10250 | Os01g0199400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |