| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10509 | 4:17,589,521-17,590,533 | + | C2H4g21488 | - | - | - | - | Detail |
| C1H4g28526 | 4:17,590,667-17,592,375 | - | C2H4g29020 | CX4g032279 | LOC_Os04g33530 | Os04g0410600 | - | Detail |
| C1H4g10207 | 4:17,611,929-17,612,785 | - | C2H4g02433 | - | - | Os04g0411100 | - | Detail |
| C1H4g13967 | 4:17,612,834-17,613,133 | + | C2H4g19013 | CX4g035834 | LOC_Os04g33560 | Os04g0411200 | - | Detail |
| C1H4g02095 | 4:17,616,514-17,617,085 | + | C2H4g14818 | CX4g035203 | - | - | - | Detail |
| C1H4g06511 | 4:17,626,583-17,628,114 | - | C2H4g06840 | CX4g034096 | LOC_Os04g33570 | Os04g0411400 | RCN4 | Detail |
| C1H4g03675 | 4:17,636,484-17,637,490 | + | C2H4g13082 | - | LOC_Os04g33580 | - | - | Detail |
| C1H4g15857 | 4:17,643,095-17,645,648 | + | - | - | - | - | - | Detail |
| C1H4g04480 | 4:17,654,285-17,659,578 | + | C2H4g18183 | CX4g034692 | LOC_Os04g33590 | Os04g0411800 | - | Detail |
| C1H4g28107 | 4:17,661,844-17,666,607 | + | C2H4g17971 | CX4g035360 | LOC_Os04g33600 | Os04g0412000 | - | Detail |
| C1H4g02994 | 4:17,674,149-17,674,772 | + | C2H4g01788 | CX4g035334 | LOC_Os04g33610 | Os04g0412100 | OsBIC1 | Detail |
| C1H4g08221 | 4:17,686,209-17,686,667 | + | C2H4g00589 | CX4g033895 | LOC_Os04g33630 | Os04g0412200 | - | Detail |
| C1H4g17898 | 4:17,688,326-17,688,592 | + | - | - | LOC_Os08g05460 | - | - | Detail |
| C1H4g31611 | 4:17,692,357-17,698,210 | + | C2H4g24079 | CX4g031818 | LOC_Os04g33640 | Os04g0412300 | - | Detail |
| C1H4g08556 | 4:17,706,346-17,707,891 | + | C2H4g24079 | CX4g035419 | LOC_Os04g33660 | Os04g0412500 | - | Detail |
| C1H4g15980 | 4:17,720,171-17,728,214 | + | C2H4g27573 | CX4g035285 | LOC_Os04g33690 | Os04g0412900 | - | Detail |
| C1H4g11558 | 4:17,728,418-17,732,847 | - | C2H4g17905 | CX4g032656 | LOC_Os04g33700 | Os04g0413000 | - | Detail |
| C1H4g19570 | 4:17,735,590-17,737,176 | + | C2H4g06805 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C1H4g31098 | 4:17,737,261-17,737,989 | + | C2H4g06805 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C1H4g06839 | 4:17,742,784-17,747,956 | + | C2H4g13973 | CX4g035303 | LOC_Os04g33740 | Os04g0413500 | GIF1, gif1, CIN2, OsCIN2, OsGIF1, WB1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g21921 | 3:11,220,180-11,220,545 | - | C1H3g02489 | CX3g028477 | - | - | - | Detail |
| C2H3g27756 | 3:11,220,386-11,226,741 | + | C1H3g18174 | CX3g024945 | LOC_Os03g21990 | Os03g0339100 | - | Detail |
| C2H3g08189 | 3:11,228,016-11,229,869 | + | C1H3g23493 | CX3g029752 | LOC_Os03g22010 | Os03g0339300 | - | Detail |
| C2H3g17635 | 3:11,230,821-11,232,950 | + | C1H3g01797 | CX3g029752 | LOC_Os03g22020 | Os03g0434800 | - | Detail |
| C2H3g03307 | 3:11,234,346-11,235,564 | - | C1H3g30937 | CX3g026989 | LOC_Os03g22020 | Os03g0434800 | - | Detail |
| C2H3g17458 | 3:11,242,758-11,245,895 | + | C1H3g22536 | CX3g028644 | LOC_Os03g22040 | Os03g0339700 | - | Detail |
| C2H3g13815 | 3:11,248,081-11,250,782 | - | C1H3g12381 | CX3g029505 | LOC_Os03g22050 | Os03g0339900 | - | Detail |
| C2H3g21418 | 3:11,256,075-11,258,086 | - | C1H3g28303 | CX3g031266 | LOC_Os03g21900 | Os03g0337600 | - | Detail |
| C2H3g25583 | 3:11,259,712-11,261,137 | - | C1H3g04870 | CX3g031266 | LOC_Os03g22060 | Os03g0340001 | - | Detail |
| C2H3g07473 | 3:11,266,164-11,266,637 | + | C1H3g07849 | CX3g031157 | LOC_Os03g22080 | Os03g0340100 | - | Detail |
| C2H3g21937 | 3:11,284,459-11,290,258 | - | C1H3g19641 | CX3g027881 | LOC_Os03g22120 | Os03g0340500 | - | Detail |
| C2H3g11733 | 3:11,294,651-11,296,579 | + | C1H3g22688 | CX3g028679 | LOC_Os03g22140 | Os03g0340700 | - | Detail |
| C2H3g03250 | 3:11,300,480-11,311,386 | + | C1H3g27719 | CX3g031206 | LOC_Os03g22160 | Os03g0340900 | ARE2 | Detail |
| C2H3g25873 | 3:11,320,223-11,321,048 | + | C1H3g08303 | CX3g029548 | LOC_Os03g22170 | Os03g0341000 | ERF66, OsERF66 | Detail |
| C2H3g03921 | 3:11,324,406-11,326,606 | - | C1H3g00753 | CX3g028062 | LOC_Os03g22180 | Os03g0341100 | - | Detail |
| C2H3g07860 | 3:11,327,474-11,332,982 | - | C1H3g18892 | CX3g030546 | LOC_Os03g22190 | Os03g0341200 | - | Detail |
| C2H3g11247 | 3:11,335,967-11,338,118 | + | C1H3g26990 | CX3g027655 | LOC_Os03g22200 | Os03g0341300 | - | Detail |
| C2H3g16648 | 3:11,346,504-11,347,184 | - | C1H3g04911 | - | LOC_Os03g22210 | Os03g0341600 | - | Detail |
| C2H3g10184 | 3:11,355,961-11,356,580 | - | C1H3g20603 | - | LOC_Os03g22230 | Os03g0342100 | - | Detail |
| C2H3g15206 | 3:11,359,421-11,359,970 | - | C1H3g13653 | - | LOC_Os03g22210 | Os03g0341600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |