| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g16846 | 4:17,416,980-17,419,232 | - | C2H4g04199 | CX4g034969 | LOC_Os04g33240 | Os04g0405300 | - | Detail |
| C1H4g08512 | 4:17,424,727-17,425,920 | - | C2H4g22752 | CX4g035634 | LOC_Os04g33260 | Os04g0405500 | - | Detail |
| C1H4g22964 | 4:17,429,536-17,436,004 | - | C2H4g29855 | CX4g036572 | LOC_Os04g33280 | Os04g0405600 | - | Detail |
| C1H4g28128 | 4:17,440,260-17,440,926 | + | C2H4g13454 | CX4g034784 | LOC_Os04g33290 | Os04g0477900 | - | Detail |
| C1H4g08917 | 4:17,446,901-17,449,788 | + | C2H4g13060 | CX4g033122 | LOC_Os04g33300 | Os04g0405800 | - | Detail |
| C1H4g24026 | 4:17,451,283-17,452,777 | - | C2H4g03472 | CX4g032232 | LOC_Os04g33310 | Os04g0405900 | - | Detail |
| C1H4g30658 | 4:17,475,456-17,475,692 | - | C2H4g07196 | - | - | - | - | Detail |
| C1H4g14696 | 4:17,479,922-17,480,842 | - | C2H4g21779 | - | LOC_Os04g33330 | Os04g0407300 | - | Detail |
| C1H4g11703 | 4:17,492,946-17,494,082 | + | C2H4g19229 | CX4g034898 | LOC_Os04g33360 | Os04g0407800 | - | Detail |
| C1H4g12008 | 4:17,526,355-17,527,671 | - | C2H4g17180 | CX4g034577 | LOC_Os04g33450 | Os04g0408600 | - | Detail |
| C1H4g11861 | 4:17,529,868-17,531,061 | - | C2H4g24924 | CX4g033600 | LOC_Os04g33440 | Os04g0408700 | - | Detail |
| C1H4g11809 | 4:17,533,613-17,536,234 | - | C2H4g01925 | CX4g033600 | LOC_Os04g33420 | Os04g0408900 | - | Detail |
| C1H4g28635 | 4:17,538,096-17,540,106 | - | C2H4g16116 | CX4g036549 | LOC_Os04g33400 | Os04g0409100 | - | Detail |
| C1H4g20347 | 4:17,540,606-17,549,663 | - | C2H4g00586 | CX4g035756 | LOC_Os04g33460 | Os04g0409200 | OsBEIIa, OsSBE4, RBE4 | Detail |
| C1H4g12620 | 4:17,551,473-17,556,334 | - | C2H4g11616 | CX4g033786 | LOC_Os04g33470 | Os04g0409500 | - | Detail |
| C1H4g14413 | 4:17,556,375-17,561,961 | + | C2H4g17999 | CX4g032352 | LOC_Os04g33480 | Os04g0409600 | DSL1, OsHDA711 | Detail |
| C1H4g17013 | 4:17,562,295-17,565,277 | + | C2H4g14351 | CX4g032016 | LOC_Os04g33490 | Os04g0409900 | - | Detail |
| C1H4g22622 | 4:17,565,695-17,569,649 | - | C2H4g05689 | CX4g034768 | LOC_Os04g33500 | Os04g0410200 | - | Detail |
| C1H4g23649 | 4:17,583,893-17,586,377 | + | C2H4g27427 | CX4g031458 | LOC_Os04g33510 | Os04g0410300 | - | Detail |
| C1H4g05147 | 4:17,587,346-17,588,552 | + | C2H4g01491 | CX4g034502 | LOC_Os04g33520 | Os04g0410400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g18962 | 5:12,540,821-12,542,672 | - | C1H5g00809 | CX5g037533 | LOC_Os05g25560 | Os05g0319900 | - | Detail |
| C2H5g16379 | 5:12,560,833-12,561,348 | + | C1H5g07771 | CX5g040926 | LOC_Os05g25600 | - | - | Detail |
| C2H5g17208 | 5:12,564,172-12,565,033 | + | C1H5g18434 | CX5g040614 | LOC_Os05g25620 | Os05g0320500 | - | Detail |
| C2H5g12884 | 5:12,571,540-12,575,563 | - | C1H5g29408 | CX5g040663 | LOC_Os05g25640 | Os05g0320700 | OsC4HL | Detail |
| C2H5g23272 | 5:12,622,131-12,622,888 | + | C1H5g31853 | CX5g039065 | - | Os05g0321900 | - | Detail |
| C2H5g30247 | 5:12,623,482-12,626,593 | + | C1H5g21190 | CX5g039065 | LOC_Os05g25770 | Os05g0321900 | - | Detail |
| C2H5g20457 | 5:12,642,054-12,643,214 | + | C1H5g09562 | CX5g039731 | LOC_Os05g25770 | Os05g0322900 | - | Detail |
| C2H5g00966 | 5:12,649,272-12,652,168 | + | C1H5g20684 | CX5g037483 | LOC_Os05g25780 | Os05g0323100 | - | Detail |
| C2H5g05199 | 5:12,658,867-12,659,098 | - | - | CX5g040463 | - | - | - | Detail |
| C2H5g12832 | 5:12,659,126-12,659,341 | - | C1H5g15138 | CX5g037550 | LOC_Os05g25784 | Os05g0323400 | - | Detail |
| C2H5g27944 | 5:12,666,481-12,670,358 | + | C1H5g03510 | - | - | - | - | Detail |
| C2H5g23193 | 5:12,666,616-12,670,222 | - | C1H5g02171 | CX5g037938 | LOC_Os05g25320 | Os05g0475600 | - | Detail |
| C2H5g25840 | 5:12,682,852-12,686,503 | + | C1H5g07569 | CX5g038231 | LOC_Os05g25840 | Os05g0323800 | - | Detail |
| C2H5g02562 | 5:12,687,807-12,692,024 | + | C1H5g09336 | CX5g039355 | LOC_Os05g25850 | Os05g0323900 | SODA1, SodA1, Mn-SOD, Mn- SOD, OsMSD, OsMSD1 | Detail |
| C2H5g29319 | 5:12,693,761-12,695,203 | + | C1H5g18365 | CX5g038450 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C2H5g21674 | 5:12,722,634-12,724,518 | + | C1H5g16408 | CX5g037596 | LOC_Os05g25170 | - | - | Detail |
| C2H5g11879 | 5:12,724,950-12,726,343 | + | C1H5g24963 | CX5g039314 | LOC_Os05g25170 | - | - | Detail |
| C2H5g22294 | 5:12,730,462-12,732,138 | + | C1H5g19700 | CX5g038330 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C2H5g05113 | 5:12,732,485-12,735,940 | - | C1H5g26142 | CX5g040251 | LOC_Os05g25880 | Os05g0324200 | - | Detail |
| C2H5g27623 | 5:12,768,072-12,770,998 | - | C1H5g16305 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |