| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g13150 | 1:19,719,183-19,724,304 | - | C2H1g07054 | CX1g004353 | LOC_Os01g39134 | Os01g0572700 | - | Detail |
| C1H1g28155 | 1:19,742,455-19,742,760 | - | C2H1g05454 | CX1g006911 | LOC_Os01g56450 | Os01g0572966 | - | Detail |
| C1H1g07908 | 1:19,752,564-19,757,343 | + | C2H1g24859 | CX1g004042 | LOC_Os01g39250 | Os01g0574400 | - | Detail |
| C1H1g29752 | 1:19,758,224-19,764,239 | + | C2H1g10171 | CX1g004042 | LOC_Os01g39260 | Os01g0574500 | - | Detail |
| C1H1g31440 | 1:19,764,424-19,766,997 | - | C2H1g01556 | CX1g006116 | LOC_Os01g39270 | Os01g0574600 | OsGR2, GLYR2 | Detail |
| C1H1g24447 | 1:19,774,505-19,775,401 | - | C2H1g15345 | - | LOC_Os01g39290 | Os01g0574800 | - | Detail |
| C1H1g25426 | 1:19,804,916-19,813,361 | + | C2H1g03847 | CX1g005853 | LOC_Os01g39310 | Os01g0575000 | - | Detail |
| C1H1g10200 | 1:19,824,319-19,828,019 | + | C2H1g02368 | CX1g007231 | LOC_Os01g39330 | Os01g0575200 | OsbHLH024 | Detail |
| C1H1g31451 | 1:19,845,647-19,862,874 | - | C2H1g09392 | CX1g002175 | LOC_Os01g39380 | Os01g0575500 | OsSCD1 | Detail |
| C1H1g30977 | 1:19,904,946-19,907,110 | + | C2H1g15351 | - | LOC_Os01g39430 | Os01g0576100 | Rb1 | Detail |
| C1H1g22058 | 1:19,919,583-19,923,825 | + | C2H1g23511 | CX1g004267 | LOC_Os01g39580 | Os01g0575701 | - | Detail |
| C1H1g30169 | 1:20,001,847-20,002,962 | + | C2H1g23392 | CX1g004267 | LOC_Os01g39480 | Os01g0575701 | - | Detail |
| C1H1g25385 | 1:20,016,397-20,019,710 | - | C2H1g00498 | CX1g005578 | LOC_Os01g39600 | Os01g0577600 | - | Detail |
| C1H1g03498 | 1:20,034,003-20,038,602 | - | C2H1g04424 | CX1g005347 | LOC_Os01g39630 | Os01g0578000 | RAD51C, RAD51C-3 | Detail |
| C1H1g20612 | 1:20,043,128-20,049,701 | - | C2H1g11258 | CX1g003861 | LOC_Os01g39650 | Os01g0578200 | - | Detail |
| C1H1g26503 | 1:20,059,781-20,060,829 | + | C2H1g04472 | CX1g000177 | LOC_Os01g39670 | Os01g0578500 | SAF, SaF, OsFbox019, OsFbox19, Os_F0070 | Detail |
| C1H1g02081 | 1:20,062,715-20,064,890 | + | C2H1g18851 | - | LOC_Os01g39680 | Os01g0578700 | SAM, SaM+, SaM | Detail |
| C1H1g21250 | 1:20,113,505-20,116,419 | + | C2H1g09591 | CX1g005488 | LOC_Os01g39770 | Os01g0579600 | OsCBL9 | Detail |
| C1H1g07602 | 1:20,121,740-20,124,076 | + | C2H1g01010 | CX1g003267 | LOC_Os01g39780 | Os01g0579800 | - | Detail |
| C1H1g16386 | 1:20,124,940-20,128,086 | - | C2H1g23706 | CX1g002908 | LOC_Os01g39790 | Os01g0579900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07934 | 3:32,405,851-32,407,559 | - | C1H3g30582 | CX3g028167 | LOC_Os03g62870 | Os03g0845700 | - | Detail |
| C2H3g24689 | 3:32,408,913-32,410,204 | - | - | - | - | - | - | Detail |
| C2H3g07789 | 3:32,438,493-32,445,145 | + | C1H3g06046 | CX3g027520 | LOC_Os03g62910 | Os03g0846400 | - | Detail |
| C2H3g25757 | 3:32,456,459-32,457,549 | - | - | - | LOC_Os03g62950 | Os03g0846900 | - | Detail |
| C2H3g14341 | 3:32,470,058-32,478,877 | + | - | - | LOC_Os03g63010 | Os03g0847500 | - | Detail |
| C2H3g13863 | 3:32,483,031-32,487,997 | + | C1H3g07662 | CX3g025569 | LOC_Os03g63020 | Os03g0847600 | - | Detail |
| C2H3g03465 | 3:32,491,368-32,496,796 | + | C1H3g18227 | CX3g030304 | LOC_Os03g63040 | Os03g0847800 | - | Detail |
| C2H3g04348 | 3:32,501,703-32,502,305 | + | C1H3g18477 | CX3g027249 | LOC_Os03g63060 | Os03g0847900 | - | Detail |
| C2H3g21474 | 3:32,504,813-32,508,143 | - | C1H3g04389 | CX3g030785 | LOC_Os03g63074 | Os03g0848100 | - | Detail |
| C2H3g05478 | 3:32,509,090-32,511,621 | - | C1H3g15296 | CX3g028645 | LOC_Os03g63074 | Os03g0848200 | OsPHY1 | Detail |
| C2H3g28774 | 3:32,513,435-32,516,248 | + | C1H3g03652 | CX3g026033 | LOC_Os03g63090 | Os03g0848300 | - | Detail |
| C2H3g19380 | 3:32,517,184-32,520,240 | - | C1H3g28105 | CX3g025110 | LOC_Os03g63110 | Os03g0848400 | - | Detail |
| C2H3g29526 | 3:32,522,477-32,525,151 | + | C1H3g31410 | CX3g025723 | LOC_Os03g63140 | Os03g0848600 | - | Detail |
| C2H3g03590 | 3:32,526,754-32,532,617 | - | C1H3g23775 | CX3g030365 | LOC_Os03g63240 | Os03g0849500 | - | Detail |
| C2H3g13329 | 3:32,535,971-32,541,994 | - | C1H3g19612 | CX3g026100 | LOC_Os03g63250 | Os03g0849600 | - | Detail |
| C2H3g05145 | 3:32,545,167-32,548,724 | + | C1H3g10745 | CX3g026065 | LOC_Os03g63260 | Os03g0849700 | - | Detail |
| C2H3g18154 | 3:32,554,973-32,558,217 | + | C1H3g07018 | CX3g025001 | LOC_Os03g63270 | Os03g0849800 | - | Detail |
| C2H3g15124 | 3:32,564,913-32,566,699 | + | C1H3g00467 | CX3g027801 | LOC_Os03g63280 | Os03g0849900 | - | Detail |
| C2H3g05105 | 3:32,568,090-32,570,179 | - | C1H3g03350 | CX3g027870 | LOC_Os03g63290 | Os03g0850000 | - | Detail |
| C2H3g00770 | 3:32,570,713-32,575,172 | - | C1H3g26148 | CX3g027371 | LOC_Os03g63300 | Os03g0850100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |