| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g00221 | 4:16,654,068-16,657,405 | - | - | - | - | - | - | Detail |
| C1H4g00621 | 4:16,659,035-16,662,449 | + | C2H4g20464 | - | LOC_Os04g32220 | Os04g0393200 | - | Detail |
| C1H4g11686 | 4:16,672,123-16,672,608 | + | C2H4g13351 | - | LOC_Os04g32250 | Os04g0393100 | - | Detail |
| C1H4g20056 | 4:16,673,986-16,676,441 | + | C2H4g20464 | - | LOC_Os04g32250 | Os04g0393100 | - | Detail |
| C1H4g08605 | 4:16,680,567-16,684,626 | - | C2H4g11378 | CX4g036058 | LOC_Os04g32270 | Os04g0393300 | - | Detail |
| C1H4g12865 | 4:16,710,219-16,715,569 | + | C2H4g10960 | CX4g034279 | LOC_Os04g32310 | Os04g0393900 | - | Detail |
| C1H4g06922 | 4:16,720,019-16,723,230 | + | C2H4g18193 | CX4g034392 | LOC_Os04g32320 | Os04g0394100 | - | Detail |
| C1H4g17845 | 4:16,725,013-16,729,329 | + | C2H4g16524 | CX4g035538 | LOC_Os04g32330 | Os04g0394200 | - | Detail |
| C1H4g05869 | 4:16,729,859-16,737,578 | - | C2H4g25961 | CX4g034536 | LOC_Os04g32340 | Os04g0394300 | - | Detail |
| C1H4g02701 | 4:16,741,767-16,749,994 | - | C2H4g27874 | CX4g036042 | LOC_Os04g32350 | Os04g0394500 | DGS1, RPC4 | Detail |
| C1H4g04290 | 4:16,760,267-16,767,220 | + | C2H4g13468 | CX4g032930 | LOC_Os04g32370 | Os04g0394700 | - | Detail |
| C1H4g22256 | 4:16,783,814-16,788,244 | - | C2H4g07831 | CX4g033841 | LOC_Os04g32460 | Os04g0395600 | - | Detail |
| C1H4g04595 | 4:16,805,450-16,806,705 | - | - | - | - | - | - | Detail |
| C1H4g21629 | 4:16,809,914-16,810,450 | - | C2H4g01216 | CX4g036177 | LOC_Os04g32470 | Os04g0395700 | - | Detail |
| C1H4g00131 | 4:16,823,498-16,827,263 | + | C2H4g05465 | CX4g033931 | LOC_Os04g32480 | Os04g0395800 | - | Detail |
| C1H4g20584 | 4:16,829,647-16,835,344 | - | C2H4g15362 | CX4g035337 | LOC_Os04g32490 | Os04g0395900 | - | Detail |
| C1H4g10776 | 4:16,899,462-16,911,243 | + | C2H4g27206 | CX4g031625 | LOC_Os04g32510 | Os04g0396500 | LAX2 | Detail |
| C1H4g30291 | 4:16,928,629-16,932,405 | + | C2H4g12362 | CX4g032605 | LOC_Os04g32540 | Os04g0396800 | - | Detail |
| C1H4g11763 | 4:16,937,937-16,939,103 | + | C2H4g11756 | CX4g036117 | LOC_Os04g32550 | Os04g0397000 | - | Detail |
| C1H4g04793 | 4:16,940,329-16,946,897 | - | C2H4g07574 | CX4g034837 | LOC_Os04g32560 | Os04g0397100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g10870 | 5:2,764,057-2,769,694 | - | C1H5g01429 | CX5g037873 | LOC_Os05g06350 | Os05g0155601 | Imp a1b, Imp3 | Detail |
| C2H5g10571 | 5:2,772,256-2,777,648 | + | C1H5g05444 | CX5g036886 | LOC_Os05g06360 | Os05g0155700 | - | Detail |
| C2H5g29906 | 5:2,783,261-2,784,652 | + | C1H5g08048 | CX5g040299 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g30592 | 5:2,792,434-2,793,738 | + | C1H5g08048 | CX5g040434 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g22135 | 5:2,799,478-2,802,268 | + | C1H5g20577 | CX5g040720 | LOC_Os05g06420 | Os05g0156200 | - | Detail |
| C2H5g24185 | 5:2,804,420-2,807,812 | - | C1H5g09510 | CX5g039738 | LOC_Os05g06430 | Os05g0156300 | - | Detail |
| C2H5g26310 | 5:2,815,955-2,820,288 | + | C1H5g09608 | CX5g036765 | LOC_Os05g06440 | Os05g0156500 | - | Detail |
| C2H5g19277 | 5:2,820,449-2,825,519 | - | C1H5g14046 | CX5g037146 | LOC_Os05g06450 | Os05g0156600 | - | Detail |
| C2H5g05970 | 5:2,827,521-2,834,014 | - | C1H5g24964 | CX5g038153 | LOC_Os05g06460 | Os05g0156700 | OsLPD1 | Detail |
| C2H5g20269 | 5:2,838,758-2,850,343 | + | C1H5g24978 | CX5g038021 | LOC_Os05g06470 | Os05g0156800 | - | Detail |
| C2H5g09414 | 5:2,851,034-2,855,117 | - | C1H5g24292 | CX5g037368 | LOC_Os05g06480 | Os05g0156900 | Chalk5 | Detail |
| C2H5g11758 | 5:2,860,791-2,863,087 | - | C1H5g00102 | CX5g037609 | LOC_Os05g06500 | Os05g0157200 | - | Detail |
| C2H5g06394 | 5:2,864,710-2,868,737 | - | C1H5g31378 | CX5g036870 | LOC_Os05g06510 | Os05g0157300 | - | Detail |
| C2H5g00238 | 5:2,873,275-2,874,014 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g01907 | 5:2,874,310-2,876,762 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g29731 | 5:2,882,126-2,886,279 | + | C1H5g16317 | CX5g040970 | LOC_Os05g06540 | Os05g0157600 | - | Detail |
| C2H5g15119 | 5:2,938,106-2,941,501 | + | C1H5g16317 | CX5g038380 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g22849 | 5:2,947,907-2,951,658 | + | C1H5g05673 | CX5g039850 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g05727 | 5:2,952,931-2,957,012 | - | C1H5g28371 | CX5g037102 | LOC_Os05g06660 | Os05g0158500 | GS5, OsSCP26 | Detail |
| C2H5g19140 | 5:2,973,259-2,979,155 | + | C1H5g06427 | CX5g037159 | LOC_Os05g06670 | Os05g0158600 | GA2OX1, OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |