| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g03562 | 4:12,928,133-12,928,405 | + | C2H4g20021 | - | - | Os04g0341100 | - | Detail |
| C1H4g19050 | 4:12,935,121-12,944,840 | - | C2H4g09454 | CX4g033674 | LOC_Os04g27340 | Os04g0340300 | OsTPS19 | Detail |
| C1H4g20792 | 4:12,968,531-12,971,065 | - | C2H4g13731 | CX4g034457 | LOC_Os04g27470 | Os04g0345400 | - | Detail |
| C1H4g05931 | 4:12,985,331-12,987,899 | - | C2H4g30131 | CX4g033401 | LOC_Os04g27430 | Os04g0342100 | OsSTPS2 | Detail |
| C1H4g04953 | 4:12,990,304-12,993,326 | - | C2H4g30131 | CX4g035836 | LOC_Os04g27430 | Os04g0342100 | OsSTPS2 | Detail |
| C1H4g10592 | 4:13,031,164-13,036,953 | - | C2H4g01920 | CX4g034334 | LOC_Os04g27540 | Os04g0345400 | - | Detail |
| C1H4g14729 | 4:13,081,514-13,083,682 | - | C2H4g22506 | CX4g034494 | LOC_Os04g27720 | Os04g0344100 | - | Detail |
| C1H4g01231 | 4:13,112,594-13,112,908 | - | C2H4g16931 | - | - | - | - | Detail |
| C1H4g17656 | 4:13,115,785-13,119,290 | - | C2H4g16931 | CX4g033401 | LOC_Os04g27790 | Os04g0345400 | - | Detail |
| C1H4g17126 | 4:13,128,022-13,130,078 | + | C2H4g12683 | CX4g036139 | LOC_Os11g08800 | - | - | Detail |
| C1H4g21918 | 4:13,135,371-13,139,973 | + | C2H4g23322 | CX4g036067 | LOC_Os04g27790 | Os04g0345400 | - | Detail |
| C1H4g23107 | 4:13,141,340-13,144,568 | - | - | CX4g033963 | - | - | - | Detail |
| C1H4g22755 | 4:13,144,706-13,146,638 | - | C2H4g27481 | - | - | - | - | Detail |
| C1H4g11276 | 4:13,155,482-13,159,609 | + | C2H4g05861 | CX4g034459 | LOC_Os04g27830 | Os04g0345800 | - | Detail |
| C1H4g11725 | 4:13,164,153-13,171,655 | + | C2H4g12493 | CX4g034468 | LOC_Os04g27850 | Os04g0346000 | - | Detail |
| C1H4g07589 | 4:13,176,401-13,176,930 | - | C2H4g15688 | CX4g032851 | - | - | - | Detail |
| C1H4g08073 | 4:13,180,391-13,181,755 | + | C2H4g22024 | CX4g034059 | LOC_Os04g27860 | Os04g0346100 | - | Detail |
| C1H4g22890 | 4:13,188,872-13,190,869 | + | C2H4g10199 | CX4g036065 | - | Os04g0346800 | - | Detail |
| C1H4g23098 | 4:13,198,680-13,202,442 | - | C2H4g07726 | CX4g036207 | LOC_Os04g27960 | Os04g0346900 | - | Detail |
| C1H4g05778 | 4:13,207,788-13,209,105 | - | C2H4g06173 | CX4g036626 | LOC_Os04g27980 | Os04g0347200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g20674 | 11:25,303,260-25,305,010 | - | C1H11g24803 | - | LOC_Os11g48030 | Os11g0707700 | - | Detail |
| C2H11g23789 | 11:25,308,395-25,309,441 | - | C1H11g24803 | CX11g012815 | LOC_Os11g48030 | Os11g0707700 | - | Detail |
| C2H11g18637 | 11:25,310,145-25,313,646 | + | C1H11g00342 | CX11g011522 | LOC_Os11g48040 | Os11g0707800 | OsUCP2 | Detail |
| C2H11g16826 | 11:25,322,422-25,325,285 | + | C1H11g07178 | CX11g014798 | LOC_Os11g48060 | Os11g0708100 | - | Detail |
| C2H11g30672 | 11:25,331,182-25,333,640 | + | C1H11g08651 | CX11g013159 | LOC_Os11g48070 | Os11g0708400 | - | Detail |
| C2H11g26751 | 11:25,335,956-25,336,894 | + | C1H10g01786 | CX11g012727 | LOC_Os11g48080 | Os11g0708500 | OsPDX1.3 | Detail |
| C2H11g05320 | 11:25,339,795-25,351,052 | - | C1H11g11341 | CX11g012342 | LOC_Os11g48090 | Os11g0708600 | - | Detail |
| C2H12g20675 | 12:22,652-23,719 | - | C1H12g21021 | CX12g015411 | - | - | - | Detail |
| C2H12g23164 | 12:27,770-28,455 | + | C1H12g08161 | CX12g017379 | - | - | - | Detail |
| C2H12g12006 | 12:28,960-31,581 | + | C1H12g08161 | CX12g015402 | - | - | - | Detail |
| C2H12g19296 | 12:36,886-47,626 | - | C1H12g25598 | CX12g017565 | - | - | - | Detail |
| C2H12g28928 | 12:48,907-50,400 | - | C1H11g11120 | CX12g016457 | LOC_Os11g01010 | Os11g0100100 | - | Detail |
| C2H12g27338 | 12:50,625-53,055 | + | C1H12g25928 | CX12g015584 | LOC_Os12g01010 | Os12g0100100 | - | Detail |
| C2H12g08992 | 12:53,444-56,416 | - | C1H12g18793 | CX12g015048 | LOC_Os12g01020 | Os12g0100200 | - | Detail |
| C2H12g02041 | 12:60,805-62,102 | - | C1H11g01849 | CX12g016135 | LOC_Os12g01030 | Os12g0100500 | - | Detail |
| C2H12g24638 | 12:63,827-65,591 | - | C1H11g20414 | CX11g013460 | - | - | - | Detail |
| C2H12g25359 | 12:80,010-86,692 | + | C1H12g18361 | CX12g016373 | LOC_Os12g01080 | Os11g0101200 | OsRpp30 | Detail |
| C2H12g22259 | 12:87,602-87,884 | + | C1H12g27411 | - | LOC_Os12g01090 | - | - | Detail |
| C2H12g02893 | 12:89,326-90,640 | + | C1H12g07544 | CX12g017682 | LOC_Os12g01100 | Os11g0101200 | OsRpp30 | Detail |
| C2H12g09125 | 12:114,841-115,452 | + | C1H11g18239 | CX12g018648 | LOC_Os12g01120 | Os12g0101600 | WOX3, OsWOX3, OsNS, OsPRS | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |