| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g21862 | 1:1,051,015-1,052,559 | + | C2H1g28129 | CX1g002300 | LOC_Os01g03300 | Os01g0123800 | - | Detail |
| C1H1g20978 | 1:1,059,633-1,060,412 | - | C2H1g07214 | CX1g006045 | LOC_Os01g03330 | Os01g0124100 | - | Detail |
| C1H1g26217 | 1:1,063,722-1,064,462 | - | C2H1g29655 | CX1g006045 | LOC_Os01g03340 | Os01g0124200 | APIP4 | Detail |
| C1H1g17115 | 1:1,071,170-1,071,919 | - | C2H1g23396 | CX1g006045 | LOC_Os01g03360 | Os01g0124401 | RBBI3-3, OsBBPI, OsBBTI5 | Detail |
| C1H1g04571 | 1:1,074,044-1,082,704 | - | C2H1g07906 | CX1g001334 | LOC_Os01g03370 | Os01g0124500 | - | Detail |
| C1H1g03968 | 1:1,100,725-1,101,285 | - | C2H1g01970 | CX1g006045 | LOC_Os01g03380 | Os01g0124600 | RBBI2-4 | Detail |
| C1H1g11231 | 1:1,102,850-1,103,413 | - | C2H1g24719 | CX1g006045 | LOC_Os01g03390 | Os01g0124650 | RBBI2-3 | Detail |
| C1H1g20507 | 1:1,105,871-1,107,283 | + | C2H1g20965 | CX1g002300 | LOC_Os01g03400 | Os01g0124900 | - | Detail |
| C1H1g05292 | 1:1,110,457-1,111,528 | + | C2H1g21334 | CX1g007074 | LOC_Os01g03410 | Os01g0124900 | - | Detail |
| C1H1g03326 | 1:1,119,952-1,120,913 | - | - | CX1g001066 | - | Os01g0125550 | - | Detail |
| C1H1g22903 | 1:1,122,927-1,124,793 | + | C2H1g11982 | CX1g000113 | LOC_Os01g03490 | Os01g0125600 | - | Detail |
| C1H1g03658 | 1:1,129,321-1,131,127 | - | C2H1g04391 | CX1g004365 | LOC_Os01g03500 | Os01g0125700 | - | Detail |
| C1H1g02796 | 1:1,135,394-1,140,577 | + | C2H1g24064 | CX1g005791 | LOC_Os01g03510 | Os01g0125800 | AIP1, OsAIP1, OsWD40-1 | Detail |
| C1H1g21228 | 1:1,142,871-1,149,173 | + | C2H1g20921 | CX1g001764 | LOC_Os01g03520 | Os01g0125900 | - | Detail |
| C1H1g00524 | 1:1,155,492-1,157,898 | + | C2H1g29668 | CX1g006307 | LOC_Os01g03530 | Os01g0126100 | OsLPR1 | Detail |
| C1H1g03013 | 1:1,158,750-1,166,808 | + | C2H1g25910 | CX1g004728 | LOC_Os01g03570 | Os01g0126600 | OsFDML2 | Detail |
| C1H1g12186 | 1:1,170,050-1,173,116 | + | C2H1g02084 | CX1g004687 | LOC_Os01g03620 | Os01g0126900 | OsLPR4 | Detail |
| C1H1g19697 | 1:1,186,923-1,189,268 | - | C2H1g15386 | CX1g000607 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| C1H1g14698 | 1:1,193,086-1,195,863 | - | C2H1g06554 | CX1g000136 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| C1H1g30854 | 1:1,201,075-1,205,127 | - | C2H1g21958 | CX1g005762 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09365 | 3:14,022,692-14,029,760 | - | C1H3g05327 | CX3g027782 | LOC_Os03g27510 | Os03g0393700 | - | Detail |
| C2H3g30087 | 3:14,032,064-14,034,436 | - | C1H3g01352 | CX3g026293 | LOC_Os03g32580 | Os03g0211900 | - | Detail |
| C2H3g11623 | 3:14,034,559-14,035,580 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g10908 | 3:14,044,828-14,047,298 | - | C1H3g19955 | CX3g027788 | LOC_Os03g32580 | Os03g0145102 | - | Detail |
| C2H3g03280 | 3:14,048,897-14,050,147 | + | - | - | - | - | - | Detail |
| C2H3g07142 | 3:14,050,595-14,051,936 | + | - | - | - | - | - | Detail |
| C2H3g17405 | 3:14,057,376-14,058,446 | - | - | - | - | - | - | Detail |
| C2H3g04527 | 3:14,069,232-14,069,991 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g28189 | 3:14,070,010-14,070,943 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g21452 | 3:14,083,851-14,085,452 | - | C1H3g17401 | CX3g029574 | - | Os03g0184000 | OsPDS | Detail |
| C2H3g10220 | 3:14,094,321-14,100,635 | - | C1H3g27278 | CX3g031229 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g08253 | 3:14,104,054-14,104,308 | - | - | - | - | - | - | Detail |
| C2H3g06277 | 3:14,167,794-14,171,626 | - | C1H3g13238 | CX3g029516 | LOC_Os03g32580 | Os03g0773700 | - | Detail |
| C2H3g13071 | 3:14,219,645-14,219,983 | - | - | - | LOC_Os02g28210 | - | - | Detail |
| C2H3g00521 | 3:14,231,740-14,241,021 | - | C1H3g28596 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C2H3g03469 | 3:14,295,554-14,300,370 | - | C1H3g26998 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C2H3g01147 | 3:14,307,579-14,309,156 | + | C1H3g17152 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C2H3g26978 | 3:14,380,764-14,384,352 | - | C1H3g03234 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C2H3g09617 | 3:14,398,273-14,401,752 | - | C1H3g11733 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C2H3g01443 | 3:14,407,064-14,410,216 | + | C1H3g19183 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |