| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23443 | 4:12,308,220-12,309,013 | + | C2H4g17585 | CX4g034186 | LOC_Os04g25140 | Os04g0317300 | - | Detail |
| C1H4g17455 | 4:12,309,067-12,314,975 | + | C2H4g17585 | CX4g034186 | LOC_Os04g25140 | Os04g0317300 | - | Detail |
| C1H4g03222 | 4:12,436,936-12,439,392 | - | C2H4g12683 | CX4g036139 | LOC_Os04g26010 | - | - | Detail |
| C1H4g27437 | 4:12,454,799-12,458,121 | + | C2H4g06583 | - | LOC_Os04g25360 | Os04g0319600 | - | Detail |
| C1H4g01135 | 4:12,459,417-12,460,937 | + | C2H4g27440 | CX4g032327 | LOC_Os04g25980 | Os04g0319700 | - | Detail |
| C1H4g27404 | 4:12,470,362-12,471,867 | + | C2H4g14364 | CX4g036582 | LOC_Os04g25380 | Os04g0319800 | - | Detail |
| C1H4g14460 | 4:12,472,624-12,476,837 | - | C2H4g16249 | CX4g034067 | - | Os04g0320000 | - | Detail |
| C1H4g11765 | 4:12,476,969-12,481,656 | - | C2H4g16249 | CX4g034067 | LOC_Os04g25960 | Os04g0320000 | - | Detail |
| C1H4g08601 | 4:12,492,663-12,497,982 | + | C2H4g13198 | CX4g034663 | LOC_Os04g25400 | Os04g0320100 | OsHCAR | Detail |
| C1H4g12613 | 4:12,498,674-12,502,234 | - | C2H4g23070 | CX4g033316 | LOC_Os04g25410 | Os04g0320200 | - | Detail |
| C1H4g07570 | 4:12,527,270-12,528,840 | - | C2H4g15158 | CX4g036503 | LOC_Os04g25440 | Os04g0320700 | - | Detail |
| C1H4g16139 | 4:12,539,902-12,541,760 | + | C2H4g21449 | CX4g034511 | LOC_Os04g25490 | Os04g0320700 | - | Detail |
| C1H4g05580 | 4:12,556,306-12,556,812 | + | C2H4g08941 | CX4g034960 | LOC_Os04g25540 | Os04g0321500 | mtRPL27a, S28 | Detail |
| C1H4g01277 | 4:12,558,301-12,564,058 | + | C2H4g14101 | - | - | - | - | Detail |
| C1H4g13430 | 4:12,564,243-12,568,920 | - | C2H4g20494 | CX4g033520 | LOC_Os04g25560 | Os04g0321700 | - | Detail |
| C1H4g19422 | 4:12,572,438-12,573,055 | - | C2H4g04631 | CX4g035269 | LOC_Os04g25570 | Os04g0609600 | - | Detail |
| C1H4g03787 | 4:12,575,830-12,578,949 | - | C2H4g15716 | CX4g031567 | LOC_Os04g25570 | Os04g0321800 | - | Detail |
| C1H4g12679 | 4:12,625,850-12,626,672 | - | - | - | - | - | - | Detail |
| C1H4g31212 | 4:12,626,446-12,626,691 | + | - | - | - | - | - | Detail |
| C1H4g31637 | 4:12,661,204-12,661,521 | + | C2H4g26903 | CX4g034246 | - | Os04g0334825 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g19767 | 8:15,121,275-15,124,496 | - | C1H8g30278 | CX8g051831 | LOC_Os08g28710 | Os08g0374701 | - | Detail |
| C2H8g22977 | 8:15,137,161-15,143,449 | - | C1H8g03479 | CX8g050795 | LOC_Os08g28730 | Os08g0374800 | Osfc24, OsUGE2, FC24/OsUGE2 | Detail |
| C2H8g13630 | 8:15,148,212-15,150,239 | - | C1H8g29557 | - | LOC_Os08g28740 | Os08g0374900 | - | Detail |
| C2H8g05259 | 8:15,150,858-15,151,166 | + | C1H8g03522 | - | - | - | - | Detail |
| C2H8g22793 | 8:15,151,403-15,151,849 | + | C1H8g21037 | CX8g051236 | - | - | - | Detail |
| C2H8g25045 | 8:15,163,933-15,165,787 | + | C1H8g29076 | CX8g051811 | LOC_Os08g29020 | Os08g0501500 | - | Detail |
| C2H8g13021 | 8:15,169,575-15,169,992 | + | - | - | - | - | - | Detail |
| C2H8g14500 | 8:15,199,178-15,203,504 | + | C1H8g18242 | CX8g054118 | LOC_Os08g28760 | Os08g0375700 | - | Detail |
| C2H8g04590 | 8:15,247,686-15,251,366 | + | C1H8g05287 | CX8g052570 | LOC_Os08g28840 | Os08g0375900 | - | Detail |
| C2H8g13625 | 8:15,256,922-15,259,854 | + | C1H8g14753 | CX8g050967 | LOC_Os08g28860 | Os08g0376200 | - | Detail |
| C2H8g14131 | 8:15,263,635-15,266,955 | - | C1H8g21009 | CX8g050470 | LOC_Os08g28870 | Os08g0376300 | - | Detail |
| C2H8g19942 | 8:15,273,609-15,276,904 | + | C1H8g02054 | CX8g054764 | LOC_Os08g28880 | Os08g0376550 | - | Detail |
| C2H8g17464 | 8:15,287,058-15,293,670 | + | C1H8g13677 | CX8g050879 | LOC_Os08g28890 | Os08g0376600 | - | Detail |
| C2H8g19076 | 8:15,298,457-15,298,695 | + | C1H8g10652 | - | - | - | - | Detail |
| C2H8g16728 | 8:15,312,119-15,316,563 | + | C1H8g03144 | CX8g053091 | LOC_Os08g28940 | Os08g0377100 | - | Detail |
| C2H8g04374 | 8:15,327,050-15,327,845 | + | C1H8g29066 | CX8g053242 | LOC_Os08g28950 | Os08g0377200 | RR12, OsRR12, Rra11, OsRR8, OsRRA11 | Detail |
| C2H8g25366 | 8:15,348,126-15,349,326 | + | C1H8g14468 | CX8g050766 | LOC_Os08g28970 | Os08g0377500 | - | Detail |
| C2H8g07044 | 8:15,349,645-15,352,586 | - | C1H8g30557 | CX8g054003 | LOC_Os08g28980 | Os08g0377400 | - | Detail |
| C2H8g29695 | 8:15,359,864-15,361,745 | - | C1H8g10166 | CX8g053995 | LOC_Os08g29110 | Os08g0378900 | OsTRXz | Detail |
| C2H8g10295 | 8:15,362,865-15,378,768 | - | C1H8g31869 | CX8g051710 | LOC_Os08g29124 | Os08g0379000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |