| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g21824 | 4:11,392,520-11,394,651 | + | C2H4g05430 | CX4g033015 | LOC_Os04g23820 | Os04g0303900 | - | Detail |
| C1H4g20117 | 4:11,395,346-11,400,455 | - | C2H4g23748 | CX4g035976 | LOC_Os04g23830 | Os04g0303950 | - | Detail |
| C1H4g14531 | 4:11,407,053-11,409,872 | - | C2H4g14626 | CX4g033018 | LOC_Os04g23849 | Os04g0304000 | - | Detail |
| C1H4g03483 | 4:11,421,262-11,433,495 | - | C2H4g21835 | CX4g032002 | LOC_Os04g23890 | Os04g0304200 | PHOT2, OsPHOT2, OsNPH1b | Detail |
| C1H4g28183 | 4:11,433,682-11,433,888 | - | - | - | - | - | - | Detail |
| C1H4g29080 | 4:11,459,311-11,461,518 | + | C2H4g30545 | CX4g034278 | LOC_Os04g23910 | Os04g0304400 | OsMADS25 | Detail |
| C1H4g12281 | 4:11,481,797-11,483,161 | - | C2H4g15928 | CX11g012075 | LOC_Os04g23940 | Os11g0566800 | OsCHS28 | Detail |
| C1H4g30822 | 4:11,540,116-11,544,461 | + | - | - | - | - | - | Detail |
| C1H4g25334 | 4:11,567,247-11,579,709 | - | C2H4g10003 | CX4g035750 | LOC_Os04g24170 | Os04g0306800 | - | Detail |
| C1H4g03408 | 4:11,584,842-11,590,287 | + | C2H4g25027 | - | LOC_Os08g15600 | - | - | Detail |
| C1H4g27699 | 4:11,590,623-11,596,884 | + | C2H4g09830 | CX4g033768 | LOC_Os04g24180 | Os04g0307200 | - | Detail |
| C1H4g00825 | 4:11,624,558-11,630,727 | + | C2H4g00695 | CX4g035129 | LOC_Os04g24300 | Os04g0307500 | - | Detail |
| C1H4g07699 | 4:11,640,696-11,645,424 | + | C2H4g00695 | CX4g035129 | LOC_Os04g24220 | Os04g0307500 | - | Detail |
| C1H4g00508 | 4:11,726,120-11,735,396 | - | C2H4g28826 | CX4g036427 | - | Os04g0307800 | - | Detail |
| C1H4g14590 | 4:11,740,035-11,741,234 | - | - | - | - | - | - | Detail |
| C1H4g01491 | 4:11,744,314-11,744,648 | + | C2H4g26507 | CX4g035129 | LOC_Os04g24300 | Os04g0367201 | - | Detail |
| C1H4g03399 | 4:11,766,396-11,771,130 | + | C2H4g13677 | CX4g035129 | LOC_Os04g24300 | Os04g0308100 | - | Detail |
| C1H4g24002 | 4:11,791,302-11,795,718 | + | C2H4g26507 | CX4g035129 | LOC_Os04g24290 | Os04g0307900 | - | Detail |
| C1H4g23203 | 4:11,820,516-11,821,438 | - | C2H4g14646 | CX4g035161 | LOC_Os04g24319 | Os04g0310200 | - | Detail |
| C1H4g07555 | 4:11,821,976-11,822,866 | + | C2H4g20750 | CX4g032444 | LOC_Os04g24328 | Os04g0310100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19859 | 3:275,286-276,089 | + | C1H3g27934 | CX3g029495 | LOC_Os03g01650 | Os03g0106900 | - | Detail |
| C2H3g20988 | 3:277,919-278,233 | + | C1H3g20839 | - | - | Os03g0106550 | - | Detail |
| C2H3g21802 | 3:280,755-281,558 | + | C1H3g09448 | CX3g029495 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C2H3g24000 | 3:286,286-287,089 | + | C1H3g09211 | CX3g029182 | LOC_Os03g01640 | Os03g0106800 | - | Detail |
| C2H3g29856 | 3:289,474-290,277 | - | C1H3g27934 | CX3g025368 | LOC_Os03g01610 | Os03g0106500 | - | Detail |
| C2H3g18319 | 3:294,137-298,154 | - | C1H3g02983 | CX3g030834 | LOC_Os03g01660 | Os03g0107000 | - | Detail |
| C2H3g12781 | 3:299,902-301,883 | + | C1H3g17953 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C2H3g12928 | 3:301,892-306,733 | + | C1H3g31596 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C2H3g02258 | 3:309,231-310,675 | - | C1H3g21747 | CX3g026726 | LOC_Os03g01700 | Os03g0107300 | LSI2, Lsi2, SIET1, OsLsi2 | Detail |
| C2H3g07101 | 3:317,398-325,316 | + | C1H3g27800 | CX3g025905 | LOC_Os03g01710 | Os03g0107400 | - | Detail |
| C2H3g28769 | 3:329,534-336,123 | + | C1H3g21135 | CX3g028047 | LOC_Os03g01720 | Os03g0107500 | - | Detail |
| C2H3g30259 | 3:338,145-339,134 | + | C1H3g09738 | CX3g029882 | LOC_Os03g01730 | Os03g0107600 | - | Detail |
| C2H3g13144 | 3:342,381-342,698 | + | C1H3g00509 | CX10g008515 | LOC_Os03g01740 | Os03g0107700 | - | Detail |
| C2H3g20378 | 3:343,714-348,648 | - | C1H3g25096 | CX3g029326 | LOC_Os03g01750 | Os03g0107800 | - | Detail |
| C2H3g26807 | 3:351,610-353,831 | + | C1H3g17188 | CX3g028603 | LOC_Os03g01760 | Os03g0107900 | - | Detail |
| C2H3g26003 | 3:355,485-356,808 | - | C1H3g00848 | CX3g030389 | LOC_Os03g01770 | Os03g0108000 | ACR2.2, CDC25.2, OsACR2.2, OsStr21, STR21 | Detail |
| C2H3g13800 | 3:357,667-358,714 | + | C1H3g19790 | CX3g028464 | LOC_Os03g01780 | Os03g0108200 | - | Detail |
| C2H3g05829 | 3:359,984-364,409 | + | C1H3g19790 | CX3g028464 | LOC_Os03g01790 | Os03g0108200 | - | Detail |
| C2H3g04954 | 3:364,453-365,755 | - | C1H3g27345 | CX3g028491 | LOC_Os03g01800 | Os03g0108300 | OsXTH19 | Detail |
| C2H3g18698 | 3:369,393-370,937 | + | C1H3g11796 | CX3g027775 | LOC_Os03g01810 | Os03g0108400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |