| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g18032 | 4:10,565,578-10,566,770 | + | - | - | - | - | - | Detail |
| C1H4g26215 | 4:10,568,171-10,572,250 | + | C2H4g29557 | CX4g031738 | LOC_Os04g22390 | Os04g0291100 | - | Detail |
| C1H4g14494 | 4:10,609,900-10,616,886 | - | C2H4g00040 | CX4g032089 | LOC_Os04g22470 | Os04g0291900 | - | Detail |
| C1H4g13988 | 4:10,654,907-10,655,417 | - | - | - | - | Os04g0294401 | - | Detail |
| C1H4g08008 | 4:10,657,842-10,659,311 | + | C2H4g21479 | CX4g033986 | LOC_Os04g22870 | Os04g0295100 | - | Detail |
| C1H4g29498 | 4:10,838,919-10,841,473 | + | C2H4g19583 | CX4g033536 | LOC_Os04g22900 | Os04g0295400 | - | Detail |
| C1H4g06386 | 4:10,846,379-10,869,908 | - | C2H4g26122 | CX4g034987 | LOC_Os04g22910 | Os04g0295500 | - | Detail |
| C1H4g25774 | 4:10,906,275-10,906,683 | + | - | - | - | - | - | Detail |
| C1H4g15580 | 4:10,956,071-10,962,500 | - | C2H4g04700 | CX4g032686 | LOC_Os04g23180 | Os04g0298200 | - | Detail |
| C1H4g16497 | 4:10,969,569-10,984,344 | + | C2H4g08377 | CX4g036520 | - | Os04g0298600 | - | Detail |
| C1H4g01397 | 4:10,994,836-10,999,686 | - | C2H4g02667 | CX4g033853 | LOC_Os04g23220 | Os04g0298700 | - | Detail |
| C1H4g03604 | 4:11,014,128-11,014,394 | + | - | CX4g034993 | - | - | - | Detail |
| C1H4g01204 | 4:11,160,142-11,164,257 | - | C2H4g29548 | CX4g034262 | LOC_Os04g23440 | Os04g0300600 | - | Detail |
| C1H4g25279 | 4:11,222,368-11,224,642 | - | C2H4g22581 | CX4g032471 | LOC_Os04g23550 | Os04g0301500 | OsbHLH6, RERJ1 | Detail |
| C1H4g20661 | 4:11,238,873-11,242,471 | - | C2H4g29063 | CX4g031736 | LOC_Os04g23580 | Os04g0301700 | - | Detail |
| C1H4g03567 | 4:11,294,754-11,298,273 | + | C2H4g08426 | - | - | - | - | Detail |
| C1H4g14212 | 4:11,342,671-11,343,433 | + | - | - | - | - | - | Detail |
| C1H4g13335 | 4:11,344,800-11,347,163 | - | C2H4g16095 | CX4g035665 | LOC_Os04g23760 | Os04g0303100 | SDRLK-24 | Detail |
| C1H4g20293 | 4:11,353,691-11,357,271 | - | C2H4g28282 | CX4g035665 | LOC_Os04g23720 | Os04g0303100 | SDRLK-24 | Detail |
| C1H4g26434 | 4:11,387,398-11,389,911 | - | C2H4g16095 | CX4g034370 | LOC_Os04g23760 | Os04g0303100 | SDRLK-24 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06554 | 1:1,267,481-1,270,261 | - | C1H1g14698 | CX1g000136 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| C2H1g21958 | 1:1,273,959-1,277,999 | - | C1H1g30854 | CX1g005762 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| C2H1g24576 | 1:1,278,156-1,280,615 | + | C1H1g00412 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C2H1g17865 | 1:1,282,083-1,282,775 | + | C1H1g25838 | CX1g002042 | LOC_Os01g19970 | Os01g0127450 | - | Detail |
| C2H1g02319 | 1:1,283,305-1,284,401 | + | C1H1g17663 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C2H1g19770 | 1:1,285,305-1,285,871 | + | C1H1g11231 | CX1g002886 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| C2H1g03781 | 1:1,288,272-1,291,329 | + | C1H1g05668 | CX1g006285 | LOC_Os01g03690 | Os01g0127700 | - | Detail |
| C2H1g13836 | 1:1,297,101-1,302,164 | + | C1H1g08835 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C2H1g25959 | 1:1,312,131-1,313,344 | - | C1H1g25654 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C2H1g01385 | 1:1,324,388-1,326,037 | - | C1H1g31764 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C2H1g18960 | 1:1,326,807-1,329,714 | + | C1H1g04042 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C2H1g15883 | 1:1,329,952-1,330,824 | - | C1H1g30874 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C2H1g19347 | 1:1,331,825-1,337,142 | - | C1H1g07436 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C2H1g18545 | 1:1,345,364-1,353,485 | + | C1H1g20521 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C2H1g10390 | 1:1,366,798-1,368,202 | + | C1H1g27481 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C2H1g17049 | 1:1,379,470-1,382,437 | - | C1H1g30507 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C2H1g13371 | 1:1,395,250-1,396,259 | + | C1H1g11492 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C2H1g20654 | 1:1,408,458-1,408,763 | - | - | CX1g003157 | LOC_Os01g03900 | Os01g0129800 | - | Detail |
| C2H1g29639 | 1:1,411,780-1,414,851 | - | C1H1g30416 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C2H1g19941 | 1:1,416,854-1,417,432 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |