| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g08510 | 4:9,126,658-9,129,921 | - | C2H4g18818 | CX4g035863 | LOC_Os04g18200 | Os04g0254000 | - | Detail |
| C1H4g21617 | 4:9,222,416-9,223,104 | - | C2H4g17454 | CX4g036140 | LOC_Os04g18090 | Os04g0253000 | OsHis1.1 | Detail |
| C1H4g20695 | 4:9,256,600-9,272,854 | + | C2H4g12300 | CX4g034469 | LOC_Os04g18030 | Os04g0252400 | - | Detail |
| C1H4g05815 | 4:9,287,150-9,314,377 | + | C2H4g01240 | CX4g036369 | LOC_Os04g18010 | Os04g0252200 | - | Detail |
| C1H4g27700 | 4:9,494,386-9,494,613 | - | C2H12g14610 | CX4g032547 | LOC_Os08g17380 | Os01g0693532 | - | Detail |
| C1H4g10578 | 4:9,529,475-9,531,193 | + | C2H4g09941 | CX4g035388 | - | Os04g0251825 | - | Detail |
| C1H4g19970 | 4:9,543,729-9,548,443 | - | C2H4g00428 | CX4g036578 | LOC_Os04g17700 | Os04g0250700 | - | Detail |
| C1H4g20438 | 4:9,549,342-9,550,620 | - | - | - | - | - | - | Detail |
| C1H4g04096 | 4:9,551,260-9,551,934 | - | C2H4g18602 | CX4g036578 | LOC_Os04g17700 | Os04g0250700 | - | Detail |
| C1H4g18576 | 4:9,552,737-9,553,033 | - | C2H4g30174 | - | - | - | - | Detail |
| C1H4g06597 | 4:9,566,559-9,576,437 | + | - | - | - | - | - | Detail |
| C1H4g13233 | 4:9,576,825-9,585,283 | + | C2H7g02439 | - | - | - | - | Detail |
| C1H4g12497 | 4:9,609,814-9,610,301 | + | C2H11g08701 | CX11g011992 | - | - | - | Detail |
| C1H4g24897 | 4:9,636,859-9,637,139 | + | C2H4g11569 | CX7g048299 | LOC_Os07g02140 | Os07g0112100 | - | Detail |
| C1H4g10149 | 4:9,639,489-9,639,934 | + | C2H4g01339 | - | LOC_Os04g20774 | Os04g0276200 | - | Detail |
| C1H4g21572 | 4:9,641,137-9,641,514 | - | C2H4g19832 | - | - | Os04g0276300 | - | Detail |
| C1H4g17350 | 4:9,646,305-9,652,403 | + | C2H4g03867 | CX4g034620 | LOC_Os04g20774 | Os04g0276200 | - | Detail |
| C1H4g30655 | 4:9,657,068-9,657,583 | + | - | - | - | - | - | Detail |
| C1H4g08188 | 4:9,663,543-9,665,827 | - | C2H4g22881 | CX4g033133 | LOC_Os04g20810 | Os04g0276600 | - | Detail |
| C1H4g22949 | 4:9,672,688-9,673,725 | + | C2H4g02557 | CX4g034199 | LOC_Os04g20880 | Os04g0277400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g21608 | 3:27,656,719-27,660,241 | - | C1H3g23470 | CX3g028973 | LOC_Os03g52630 | Os03g0736300 | - | Detail |
| C2H3g15503 | 3:27,664,564-27,668,007 | - | C1H3g16767 | CX3g029628 | LOC_Os03g52640 | Os03g0736400 | - | Detail |
| C2H3g14297 | 3:27,669,405-27,673,074 | + | C1H3g06383 | CX3g026452 | LOC_Os03g52650 | Os03g0736500 | - | Detail |
| C2H3g25472 | 3:27,673,881-27,674,926 | - | C1H3g27583 | CX3g030782 | LOC_Os03g52670 | Os03g0736700 | - | Detail |
| C2H3g06997 | 3:27,690,841-27,694,864 | - | C1H3g22100 | CX3g030023 | LOC_Os03g52690 | Os03g0737000 | - | Detail |
| C2H3g03773 | 3:27,700,068-27,708,325 | - | C1H3g13284 | CX3g030091 | LOC_Os03g52700 | Os03g0737200 | OsHOS1 | Detail |
| C2H3g13435 | 3:27,709,054-27,711,006 | - | C1H3g01016 | CX3g030361 | LOC_Os03g52720 | Os03g0737300 | - | Detail |
| C2H3g06862 | 3:27,713,948-27,715,594 | - | C1H3g28619 | CX3g030361 | LOC_Os03g52730 | Os03g0737400 | - | Detail |
| C2H3g04382 | 3:27,716,139-27,720,319 | + | C1H3g18700 | CX3g025820 | LOC_Os03g52750 | Os03g0737600 | - | Detail |
| C2H3g27223 | 3:27,724,488-27,727,069 | - | C1H3g06923 | CX3g026634 | LOC_Os03g52760 | Os03g0737701 | OsMIK, LPA | Detail |
| C2H3g08831 | 3:27,729,452-27,739,232 | + | C1H3g13520 | CX3g025574 | LOC_Os03g52770 | Os03g0737800 | - | Detail |
| C2H3g00418 | 3:27,739,440-27,742,656 | - | C1H3g22442 | CX3g026366 | LOC_Os03g52780 | Os03g0737900 | - | Detail |
| C2H3g24375 | 3:27,742,829-27,746,487 | + | C1H3g19238 | CX3g026865 | LOC_Os03g52794 | Os03g0738000 | - | Detail |
| C2H3g01060 | 3:27,747,275-27,765,946 | + | C1H3g14512 | CX3g030189 | LOC_Os03g52794 | Os03g0738200 | - | Detail |
| C2H3g05635 | 3:27,767,482-27,772,151 | + | C1H3g21044 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C2H3g05845 | 3:27,783,515-27,787,131 | + | C1H3g07947 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C2H3g02923 | 3:27,794,046-27,796,994 | + | C1H3g24267 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C2H3g01404 | 3:27,805,911-27,807,678 | + | C1H3g14490 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C2H3g15580 | 3:27,837,312-27,841,357 | + | C1H3g22532 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C2H3g17064 | 3:27,842,274-27,846,884 | + | C1H3g30167 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |