| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g17421 | 4:7,246,194-7,249,276 | + | C2H4g23707 | CX4g035840 | LOC_Os04g15580 | Os04g0226600 | SDK5 | Detail |
| C1H4g13475 | 4:7,291,945-7,297,622 | + | C2H4g25122 | CX4g031366 | LOC_Os04g15630 | Os04g0226800 | - | Detail |
| C1H4g00401 | 4:7,313,161-7,313,510 | - | C2H4g17108 | CX4g036483 | - | - | - | Detail |
| C1H4g23086 | 4:7,315,726-7,319,359 | + | C2H4g21260 | CX4g031429 | LOC_Os04g15650 | Os04g0227000 | - | Detail |
| C1H4g29899 | 4:7,323,149-7,326,212 | + | C2H4g25122 | CX4g032952 | LOC_Os04g15660 | Os04g0227200 | - | Detail |
| C1H4g14643 | 4:7,326,875-7,327,342 | + | - | - | LOC_Os04g15670 | - | - | Detail |
| C1H4g05741 | 4:7,327,550-7,328,194 | + | C2H4g20815 | CX4g034260 | - | - | - | Detail |
| C1H4g21393 | 4:7,348,315-7,353,116 | + | C2H4g23720 | CX4g031813 | LOC_Os04g15690 | Os04g0227500 | - | Detail |
| C1H4g20234 | 4:7,401,306-7,407,705 | + | C2H4g14611 | CX4g031792 | LOC_Os04g15790 | Os04g0228000 | - | Detail |
| C1H4g18604 | 4:7,408,692-7,410,261 | - | C2H4g07965 | CX4g034799 | LOC_Os04g15800 | Os04g0228100 | - | Detail |
| C1H4g11154 | 4:7,429,401-7,430,300 | + | C2H4g30466 | CX4g032333 | LOC_Os04g15840 | Os04g0228400 | - | Detail |
| C1H4g10435 | 4:7,529,155-7,530,913 | + | C2H4g04987 | CX4g032650 | LOC_Os04g15920 | Os04g0229100 | - | Detail |
| C1H4g12432 | 4:7,645,798-7,647,573 | - | C2H4g16212 | CX4g035418 | LOC_Os04g16450 | Os04g0233400 | - | Detail |
| C1H4g05686 | 4:7,690,602-7,691,311 | - | C2H4g27955 | CX4g031918 | - | - | - | Detail |
| C1H4g27994 | 4:7,693,309-7,693,917 | - | C2H4g26981 | CX4g032553 | LOC_Os04g16670 | Os04g0234500 | - | Detail |
| C1H4g21505 | 4:7,696,459-7,698,967 | - | C2H4g10242 | CX4g033851 | LOC_Os04g16680 | Os04g0234600 | - | Detail |
| C1H4g27374 | 4:7,705,669-7,708,530 | - | - | - | - | - | - | Detail |
| C1H4g23703 | 4:7,737,481-7,737,828 | - | C2H4g15292 | CX4g031641 | LOC_Os04g16970 | Os04g0243700 | - | Detail |
| C1H4g06530 | 4:7,827,242-7,834,569 | + | C2H4g16796 | CX4g036392 | LOC_Os04g17050 | Os04g0244400 | - | Detail |
| C1H4g21440 | 4:7,837,425-7,838,084 | + | C2H4g15471 | CX4g033261 | - | Os04g0244500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g13325 | 4:23,061,378-23,062,726 | + | C1H4g04293 | CX4g032173 | LOC_Os04g45110 | Os04g0533700 | - | Detail |
| C2H4g03644 | 4:23,064,571-23,065,889 | + | C1H4g02662 | CX4g034142 | LOC_Os04g45110 | Os04g0533800 | - | Detail |
| C2H4g29508 | 4:23,066,728-23,067,296 | - | C1H4g24399 | CX4g035061 | LOC_Os04g45130 | Os04g0533900 | - | Detail |
| C2H4g00685 | 4:23,071,158-23,073,252 | + | C1H4g27874 | CX4g035081 | LOC_Os04g45140 | Os04g0534000 | - | Detail |
| C2H4g06663 | 4:23,077,733-23,083,462 | + | C1H4g24867 | CX4g034679 | LOC_Os04g45160 | Os04g0534100 | - | Detail |
| C2H4g23267 | 4:23,086,827-23,092,064 | + | C1H4g25917 | CX4g035606 | LOC_Os04g45170 | Os04g0534200 | - | Detail |
| C2H4g02980 | 4:23,092,484-23,095,736 | + | C1H4g04893 | CX4g035479 | LOC_Os04g45180 | Os04g0534300 | - | Detail |
| C2H4g26245 | 4:23,096,588-23,099,122 | - | C1H4g22337 | CX4g033395 | LOC_Os04g45190 | Os04g0534400 | - | Detail |
| C2H4g14817 | 4:23,099,942-23,102,961 | - | C1H4g09749 | CX4g033395 | LOC_Os04g45200 | Os04g0534500 | - | Detail |
| C2H4g22478 | 4:23,103,650-23,104,318 | + | C1H4g00533 | CX4g032262 | LOC_Os04g45210 | Os04g0534600 | PEX11-4, OsPEX11-4 | Detail |
| C2H4g02373 | 4:23,107,942-23,120,196 | + | C1H4g19114 | - | LOC_Os04g45240 | Os04g0535000 | - | Detail |
| C2H4g14595 | 4:23,123,972-23,126,517 | - | C1H4g29726 | CX4g033854 | LOC_Os04g45270 | Os04g0535200 | - | Detail |
| C2H4g23856 | 4:23,131,943-23,134,322 | - | C1H4g01959 | CX4g034978 | LOC_Os04g45280 | Os04g0535400 | - | Detail |
| C2H4g26752 | 4:23,141,170-23,147,441 | + | C1H4g06579 | CX4g035610 | LOC_Os04g45290 | Os04g0535600 | - | Detail |
| C2H4g06470 | 4:23,154,778-23,156,860 | - | C1H4g20764 | CX4g032877 | LOC_Os04g45330 | Os04g0536300 | YAB5, OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1 | Detail |
| C2H4g12296 | 4:23,162,279-23,163,469 | - | C1H4g08042 | CX4g036228 | LOC_Os04g45340 | Os04g0536500 | - | Detail |
| C2H4g14415 | 4:23,180,632-23,182,410 | + | - | CX4g031509 | LOC_Os04g56690 | Os04g0537100 | - | Detail |
| C2H4g22304 | 4:23,190,250-23,192,821 | + | C1H4g08874 | CX4g032484 | LOC_Os04g45460 | Os04g0537800 | - | Detail |
| C2H4g19071 | 4:23,193,136-23,197,796 | - | C1H4g01755 | CX4g032962 | LOC_Os04g45470 | Os04g0537900 | GLUP3, glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3 | Detail |
| C2H4g24565 | 4:23,199,728-23,203,421 | + | C1H4g06397 | CX4g031799 | LOC_Os04g45480 | Os04g0538000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |