| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g17421 | 4:7,246,194-7,249,276 | + | C2H4g23707 | CX4g035840 | LOC_Os04g15580 | Os04g0226600 | SDK5 | Detail |
| C1H4g13475 | 4:7,291,945-7,297,622 | + | C2H4g25122 | CX4g031366 | LOC_Os04g15630 | Os04g0226800 | - | Detail |
| C1H4g00401 | 4:7,313,161-7,313,510 | - | C2H4g17108 | CX4g036483 | - | - | - | Detail |
| C1H4g23086 | 4:7,315,726-7,319,359 | + | C2H4g21260 | CX4g031429 | LOC_Os04g15650 | Os04g0227000 | - | Detail |
| C1H4g29899 | 4:7,323,149-7,326,212 | + | C2H4g25122 | CX4g032952 | LOC_Os04g15660 | Os04g0227200 | - | Detail |
| C1H4g14643 | 4:7,326,875-7,327,342 | + | - | - | LOC_Os04g15670 | - | - | Detail |
| C1H4g05741 | 4:7,327,550-7,328,194 | + | C2H4g20815 | CX4g034260 | - | - | - | Detail |
| C1H4g21393 | 4:7,348,315-7,353,116 | + | C2H4g23720 | CX4g031813 | LOC_Os04g15690 | Os04g0227500 | - | Detail |
| C1H4g20234 | 4:7,401,306-7,407,705 | + | C2H4g14611 | CX4g031792 | LOC_Os04g15790 | Os04g0228000 | - | Detail |
| C1H4g18604 | 4:7,408,692-7,410,261 | - | C2H4g07965 | CX4g034799 | LOC_Os04g15800 | Os04g0228100 | - | Detail |
| C1H4g11154 | 4:7,429,401-7,430,300 | + | C2H4g30466 | CX4g032333 | LOC_Os04g15840 | Os04g0228400 | - | Detail |
| C1H4g10435 | 4:7,529,155-7,530,913 | + | C2H4g04987 | CX4g032650 | LOC_Os04g15920 | Os04g0229100 | - | Detail |
| C1H4g12432 | 4:7,645,798-7,647,573 | - | C2H4g16212 | CX4g035418 | LOC_Os04g16450 | Os04g0233400 | - | Detail |
| C1H4g05686 | 4:7,690,602-7,691,311 | - | C2H4g27955 | CX4g031918 | - | - | - | Detail |
| C1H4g27994 | 4:7,693,309-7,693,917 | - | C2H4g26981 | CX4g032553 | LOC_Os04g16670 | Os04g0234500 | - | Detail |
| C1H4g21505 | 4:7,696,459-7,698,967 | - | C2H4g10242 | CX4g033851 | LOC_Os04g16680 | Os04g0234600 | - | Detail |
| C1H4g27374 | 4:7,705,669-7,708,530 | - | - | - | - | - | - | Detail |
| C1H4g23703 | 4:7,737,481-7,737,828 | - | C2H4g15292 | CX4g031641 | LOC_Os04g16970 | Os04g0243700 | - | Detail |
| C1H4g06530 | 4:7,827,242-7,834,569 | + | C2H4g16796 | CX4g036392 | LOC_Os04g17050 | Os04g0244400 | - | Detail |
| C1H4g21440 | 4:7,837,425-7,838,084 | + | C2H4g15471 | CX4g033261 | - | Os04g0244500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g03424 | 6:24,408,283-24,409,997 | - | C1H6g04835 | CX6g042765 | LOC_Os06g46030 | Os06g0672400 | OsG1L2 | Detail |
| C2H6g12858 | 6:24,422,938-24,423,922 | - | - | - | - | - | - | Detail |
| C2H6g07492 | 6:24,427,959-24,428,420 | - | C1H6g06589 | CX6g042065 | - | Os06g0531000 | - | Detail |
| C2H6g20505 | 6:24,434,698-24,435,501 | - | C1H6g00429 | - | LOC_Os06g46120 | Os06g0673300 | - | Detail |
| C2H6g02105 | 6:24,435,643-24,437,220 | + | - | CX6g042455 | - | - | - | Detail |
| C2H6g16269 | 6:24,436,756-24,439,505 | - | C1H6g04560 | CX6g044377 | LOC_Os06g46120 | Os06g0672700 | - | Detail |
| C2H6g04402 | 6:24,445,673-24,446,671 | - | C1H6g09876 | - | LOC_Os06g46065 | Os06g0672801 | - | Detail |
| C2H6g03521 | 6:24,470,199-24,470,987 | - | C1H6g06204 | CX6g042629 | - | Os06g0674000 | - | Detail |
| C2H6g03862 | 6:24,492,016-24,494,187 | - | C1H6g14950 | CX6g044991 | - | Os06g0674000 | - | Detail |
| C2H6g02186 | 6:24,583,163-24,583,878 | + | - | - | - | - | - | Detail |
| C2H6g00947 | 6:24,634,534-24,639,823 | + | C1H6g03179 | CX6g041920 | LOC_Os06g46240 | Os06g0674800 | - | Detail |
| C2H6g16522 | 6:24,662,696-24,666,303 | + | C1H6g03218 | CX6g042717 | LOC_Os06g46270 | Os06g0675600 | OsY37, ONAC011 | Detail |
| C2H6g30405 | 6:24,669,913-24,680,390 | - | C1H6g29534 | CX6g042747 | LOC_Os06g46284 | Os06g0675700 | ONG3 | Detail |
| C2H6g20637 | 6:24,681,360-24,687,204 | - | C1H6g05961 | CX6g043872 | LOC_Os06g46310 | Os06g0676000 | NRAMP3, OsNramp3, OsNRAMP3 | Detail |
| C2H6g24034 | 6:24,708,566-24,710,624 | - | C1H6g12474 | CX6g042075 | LOC_Os06g46330 | Os06g0676600 | - | Detail |
| C2H6g04890 | 6:24,719,088-24,723,422 | + | C1H6g29534 | CX6g041293 | LOC_Os06g46340 | Os06g0676700 | - | Detail |
| C2H6g08388 | 6:24,728,689-24,734,073 | - | C1H6g30642 | CX6g042639 | LOC_Os06g46350 | Os06g0677000 | DEP3, OspPLAIIIδ | Detail |
| C2H6g24564 | 6:24,755,079-24,759,465 | + | C1H6g11720 | CX6g043789 | LOC_Os06g46366 | Os06g0677300 | - | Detail |
| C2H6g27620 | 6:24,760,581-24,763,915 | + | C1H6g31002 | CX6g045150 | LOC_Os06g46372 | Os06g0677400 | - | Detail |
| C2H6g16974 | 6:24,765,283-24,769,704 | + | C1H6g05901 | CX6g042145 | LOC_Os06g46380 | Os06g0677500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |