| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g14486 | 4:6,817,175-6,824,716 | - | C2H4g23137 | CX4g035733 | LOC_Os04g14410 | Os04g0221000 | - | Detail |
| C1H4g17568 | 4:6,828,594-6,831,355 | + | C2H4g04277 | - | LOC_Os04g14420 | - | - | Detail |
| C1H4g30087 | 4:6,838,546-6,839,772 | - | C2H4g14084 | CX4g033365 | LOC_Os04g14450 | Os04g0221300 | - | Detail |
| C1H4g30194 | 4:6,840,572-6,841,006 | - | C2H4g14084 | CX4g033365 | LOC_Os04g14130 | Os04g0110500 | - | Detail |
| C1H4g20191 | 4:6,869,806-6,879,558 | - | C2H4g15681 | CX4g036219 | LOC_Os04g14510 | Os04g0221600 | - | Detail |
| C1H4g11172 | 4:6,895,680-6,897,959 | - | C2H4g06170 | CX4g034321 | LOC_Os04g14540 | Os04g0221800 | - | Detail |
| C1H4g05154 | 4:6,922,537-6,923,256 | - | C2H4g16880 | CX4g036574 | LOC_Os04g14560 | Os04g0213800 | - | Detail |
| C1H4g27190 | 4:6,923,883-6,927,454 | - | C2H4g04514 | CX4g031595 | LOC_Os04g14570 | Os04g0226800 | - | Detail |
| C1H4g09121 | 4:6,969,066-6,985,444 | - | C2H4g15426 | CX4g033711 | LOC_Os04g14654 | Os04g0223000 | - | Detail |
| C1H4g19080 | 4:6,991,499-6,993,901 | - | C2H4g19689 | CX4g031538 | LOC_Os04g14680 | Os04g0223300 | - | Detail |
| C1H4g25173 | 4:6,996,751-7,002,926 | - | C2H4g12058 | CX4g031401 | LOC_Os04g14690 | Os04g0223500 | - | Detail |
| C1H4g16118 | 4:7,022,336-7,027,659 | - | C2H4g10349 | CX4g035150 | LOC_Os04g14690 | Os04g0223901 | - | Detail |
| C1H4g31119 | 4:7,036,081-7,045,942 | - | C2H4g13050 | CX4g032607 | LOC_Os11g41400 | - | - | Detail |
| C1H4g31787 | 4:7,056,287-7,059,770 | - | C2H4g13102 | - | - | - | - | Detail |
| C1H4g10957 | 4:7,064,606-7,069,418 | - | C2H4g12943 | CX4g031570 | LOC_Os04g14760 | Os04g0224600 | - | Detail |
| C1H4g03285 | 4:7,083,915-7,090,863 | - | C2H4g19938 | CX4g035046 | LOC_Os04g14790 | Os04g0224900 | - | Detail |
| C1H4g03083 | 4:7,097,287-7,097,922 | - | C2H4g08415 | CX4g031444 | LOC_Os04g14810 | Os04g0225100 | - | Detail |
| C1H4g26221 | 4:7,124,370-7,126,064 | - | C2H4g08150 | CX4g034584 | LOC_Os04g14840 | Os04g0103500 | SDRLK-21 | Detail |
| C1H4g22740 | 4:7,182,049-7,184,011 | + | C2H4g25571 | CX4g032785 | LOC_Os04g14990 | Os04g0225700 | - | Detail |
| C1H4g21527 | 4:7,197,540-7,199,741 | + | C2H4g26908 | CX4g032287 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17746 | 3:5,298,248-5,304,864 | + | C1H3g17331 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C2H3g08543 | 3:5,305,257-5,310,545 | + | C1H3g12951 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C2H3g18859 | 3:5,311,539-5,315,043 | + | C1H3g14932 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C2H3g25555 | 3:5,315,485-5,320,858 | - | C1H3g10644 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C2H3g22606 | 3:5,325,484-5,328,881 | - | C1H3g04750 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C2H3g22039 | 3:5,331,057-5,334,978 | + | C1H3g15538 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C2H3g03744 | 3:5,337,484-5,342,418 | - | C1H3g09681 | - | - | - | - | Detail |
| C2H3g29664 | 3:5,344,016-5,347,863 | - | C1H3g00304 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C2H3g24849 | 3:5,374,993-5,381,339 | + | C1H3g11825 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C2H3g11270 | 3:5,386,951-5,389,327 | - | C1H3g00757 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g18287 | 3:5,395,313-5,395,507 | - | C1H3g04456 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g25916 | 3:5,416,591-5,421,828 | + | C1H3g30377 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C2H3g12512 | 3:5,422,610-5,426,000 | + | C1H3g02997 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C2H3g19342 | 3:5,426,491-5,428,521 | - | C1H3g12813 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C2H3g13701 | 3:5,436,359-5,437,252 | - | C1H3g00186 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C2H3g30038 | 3:5,450,317-5,452,147 | + | C1H3g15045 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C2H3g29170 | 3:5,452,840-5,453,269 | + | - | - | - | - | - | Detail |
| C2H3g05049 | 3:5,453,922-5,455,100 | - | C1H3g15740 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C2H3g19799 | 3:5,456,253-5,457,305 | - | C1H3g17461 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C2H3g02073 | 3:5,459,766-5,463,790 | + | C1H3g21782 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |