| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24802 | 4:4,207,295-4,209,633 | + | C2H4g27360 | CX4g035182 | LOC_Os04g10350 | Os04g0182200 | - | Detail |
| C1H4g04177 | 4:4,213,634-4,215,922 | - | C2H4g24237 | CX4g032170 | LOC_Os04g10360 | Os04g0182300 | - | Detail |
| C1H4g12559 | 4:4,223,766-4,244,689 | + | C2H4g25006 | CX4g032156 | LOC_Os04g10380 | Os04g0182650 | - | Detail |
| C1H4g07822 | 4:4,252,219-4,255,411 | - | C2H4g08700 | CX4g034981 | LOC_Os04g10400 | Os04g0182800 | ETFβ | Detail |
| C1H4g30986 | 4:4,271,462-4,272,037 | + | C2H4g00175 | CX4g033125 | LOC_Os04g10410 | Os04g0182875 | - | Detail |
| C1H4g14844 | 4:4,272,162-4,275,686 | + | C2H4g00175 | CX4g033125 | LOC_Os04g10410 | Os04g0182900 | - | Detail |
| C1H4g21941 | 4:4,278,915-4,287,340 | - | C2H4g19427 | CX4g036220 | LOC_Os04g10420 | Os04g0183100 | - | Detail |
| C1H4g31194 | 4:4,290,975-4,293,975 | + | C2H4g17515 | CX4g032018 | LOC_Os04g10770 | - | - | Detail |
| C1H4g29252 | 4:4,307,862-4,308,098 | - | - | CX4g032745 | - | - | - | Detail |
| C1H4g19812 | 4:4,344,320-4,347,331 | - | C2H4g16001 | CX4g032136 | LOC_Os04g09604 | Os04g0176200 | - | Detail |
| C1H4g11860 | 4:4,347,417-4,347,875 | - | C2H4g27334 | CX4g032136 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g02342 | 4:4,359,374-4,363,783 | - | C2H4g09797 | CX4g036220 | LOC_Os04g10420 | Os04g0183100 | - | Detail |
| C1H4g18867 | 4:4,366,014-4,371,573 | + | C2H4g03609 | CX4g035351 | LOC_Os04g10434 | Os04g0184801 | - | Detail |
| C1H4g19839 | 4:4,396,062-4,399,042 | + | C2H4g16056 | CX4g035942 | LOC_Os04g10460 | Os04g0183500 | - | Detail |
| C1H4g20902 | 4:4,440,523-4,445,534 | + | C2H4g03832 | CX4g034818 | LOC_Os04g10530 | Os04g0184100 | - | Detail |
| C1H4g24756 | 4:4,447,043-4,449,244 | - | C2H4g15311 | CX4g033052 | LOC_Os04g09740 | Os01g0373400 | - | Detail |
| C1H4g09877 | 4:4,455,587-4,456,423 | + | C2H4g16196 | CX4g035942 | LOC_Os04g10569 | Os04g0184801 | - | Detail |
| C1H4g04912 | 4:4,459,747-4,461,484 | + | C2H4g22298 | CX4g034818 | LOC_Os04g10630 | Os04g0184100 | - | Detail |
| C1H4g10478 | 4:4,464,122-4,464,900 | + | C2H4g20970 | CX4g035942 | LOC_Os04g10640 | Os04g0185000 | - | Detail |
| C1H4g27981 | 4:4,465,931-4,468,578 | - | C2H4g20831 | CX4g035484 | LOC_Os04g10650 | Os04g0185100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g18413 | 4:29,693,561-29,699,613 | - | C1H4g12099 | CX4g034422 | LOC_Os04g57670 | Os04g0672700 | - | Detail |
| C2H4g13935 | 4:29,701,445-29,704,747 | + | C1H4g02898 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C2H4g25125 | 4:29,705,783-29,708,184 | + | C1H4g21333 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C2H4g28032 | 4:29,709,880-29,714,931 | - | C1H4g29753 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C2H4g17256 | 4:29,737,558-29,738,174 | + | C1H4g17441 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C2H4g16666 | 4:29,745,422-29,749,700 | - | C1H4g06545 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C2H4g21541 | 4:29,752,035-29,752,662 | - | C1H4g12522 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C2H4g03386 | 4:29,757,348-29,758,304 | - | C1H4g09977 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| C2H4g22422 | 4:29,766,013-29,768,955 | - | C1H4g25879 | CX4g033668 | LOC_Os04g57780 | Os04g0674100 | - | Detail |
| C2H4g06265 | 4:29,774,553-29,775,787 | + | C1H4g19205 | CX4g033580 | LOC_Os04g57790 | Os04g0674200 | - | Detail |
| C2H4g15166 | 4:29,776,488-29,781,050 | - | C1H4g22285 | CX4g034130 | LOC_Os04g57800 | Os04g0674300 | - | Detail |
| C2H4g17817 | 4:29,783,015-29,783,610 | - | C1H4g01102 | - | - | Os04g0674350 | - | Detail |
| C2H4g23831 | 4:29,783,738-29,786,479 | + | C1H4g13095 | CX4g032486 | LOC_Os04g57810 | Os04g0674400 | OsDRE2a | Detail |
| C2H4g13778 | 4:29,789,504-29,794,076 | + | C1H4g14562 | CX4g036032 | LOC_Os04g57819 | Os04g0674450 | - | Detail |
| C2H4g19163 | 4:29,798,804-29,801,306 | + | C1H4g20705 | - | - | - | - | Detail |
| C2H4g22750 | 4:29,802,403-29,805,885 | - | C1H4g25678 | CX4g034412 | LOC_Os04g57840 | Os04g0674600 | - | Detail |
| C2H4g08185 | 4:29,806,506-29,808,620 | - | C1H4g14424 | CX4g034499 | LOC_Os04g57850 | Os04g0674700 | OsBIABP1 | Detail |
| C2H4g18901 | 4:29,812,600-29,815,642 | - | C1H4g31604 | CX4g031749 | LOC_Os04g57860 | Os04g0674800 | OsRHC | Detail |
| C2H4g07191 | 4:29,818,808-29,824,861 | - | C1H4g22329 | CX4g034095 | LOC_Os04g57870 | Os04g0675000 | - | Detail |
| C2H4g13536 | 4:29,834,270-29,853,732 | + | C1H4g08555 | CX4g033430 | - | Os04g0675300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |